View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_low_3 (Length: 624)
Name: NF13085_low_3
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 78 - 541
Target Start/End: Original strand, 53720015 - 53720479
Alignment:
| Q |
78 |
catgatcatatcatttaagactaaaattagaaattgcaggcccaggcgtgagttgcctaagaggatgatcggattaataagtgggcagaggaggggttat |
177 |
Q |
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| T |
53720015 |
catgatcatatcatttaagactaaaattagaaattgcaggcccaggcgtgagttgcctaagaggatgatcggattaataagtgggcagaggaggggttat |
53720114 |
T |
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| Q |
178 |
agaaaac-aggggggaacggcaggcacaaagatacggtcgaggagggggtccaaggaaacccaattaaggattaggccaatgaaggtggcccaaagagcg |
276 |
Q |
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| T |
53720115 |
agaaaaccaggggggaacggcaggcacaaagatacggtcgaggagggggtccaaggaaacccaattaaggattaggccaatgaaggtggcccaaagagtg |
53720214 |
T |
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| Q |
277 |
gggtggtggcgaggaaacaaacgtgtacccaagtttttggtgtctactcttttttgtgtcaaatgcaaagagtatagcaacgaaactcacacgcattaag |
376 |
Q |
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| T |
53720215 |
gggtgttggcgaggaaacaaacgtgtacccaagtttttggtgtctactcttttttgtttcaaatgcaaagagtatagcaacgaaactcacacgcattaag |
53720314 |
T |
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| Q |
377 |
tgtgcaaaagtattttaggttaggatgtgcggcgcctcaatgtatcaaatgtttaggcaacctcttgcgatctaaagtacaccaattgcactttgctgtg |
476 |
Q |
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| T |
53720315 |
tgtgcaaaagtattctaggttaggatgtgcggtgcctcaatgtatcaaatgtttaggcaacctcttacgatctaaagtacaccaattgtactttgctgtg |
53720414 |
T |
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| Q |
477 |
tacgttaactagtaacatcacaacaaatgcattccacttttgagttgattgaagtttaatttcct |
541 |
Q |
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| T |
53720415 |
tacgttaactagtaacatcacaacaaatgcattccacttttgagttgaatgaagtttaatttcct |
53720479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 492 - 541
Target Start/End: Original strand, 53720556 - 53720605
Alignment:
| Q |
492 |
catcacaacaaatgcattccacttttgagttgattgaagtttaatttcct |
541 |
Q |
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| T |
53720556 |
catcacagcaaatgcattccacttttgagttgaatgaagtttaatttcct |
53720605 |
T |
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