View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_low_33 (Length: 221)
Name: NF13085_low_33
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 48893091 - 48892912
Alignment:
| Q |
19 |
ccatggacttctcgtgaagatgcattgctcaccaaatatattcaagctcatggagaaggccaatggagatcacttccaaaaagagctggtaatttaattt |
118 |
Q |
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| T |
48893091 |
ccatggacttctcgtgaagatgcattgctcaccaaatatattcaagctcatggagaaggccaatggagatcacttccaaaaagagctggtaatttaattt |
48892992 |
T |
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| Q |
119 |
ctttattccttcattgtcttttaattttatcaaatac---catgagcactactcggatttgtgtgtcctttttctgacac |
195 |
Q |
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| T |
48892991 |
ctttattccttaattgtcttttaattttatcaattacaatcacgaacactactcggatttgtgtgtcctgtgtctgacac |
48892912 |
T |
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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 9621408 - 9621484
Alignment:
| Q |
34 |
gaagatgcattgctcaccaaatatattcaagctcatggagaaggccaatggagatcacttccaaaaagagctggtaa |
110 |
Q |
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| T |
9621408 |
gaagatgcattgcttacaaaatatgttcaagctcatggtgaaggccaatggaaatcacttcctaaaaaagctggtaa |
9621484 |
T |
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