View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13085_low_4 (Length: 538)

Name: NF13085_low_4
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13085_low_4
NF13085_low_4
[»] chr1 (13 HSPs)
chr1 (234-387)||(3091650-3091803)
chr1 (407-538)||(3092852-3092983)
chr1 (69-154)||(14461716-14461801)
chr1 (65-154)||(5559393-5559482)
chr1 (45-142)||(24063911-24064008)
chr1 (59-154)||(41198518-41198613)
chr1 (49-154)||(24614743-24614848)
chr1 (65-154)||(41074903-41074992)
chr1 (52-154)||(7004675-7004777)
chr1 (64-154)||(33719608-33719698)
chr1 (59-154)||(16902572-16902667)
chr1 (66-154)||(28655580-28655668)
chr1 (65-105)||(11956335-11956375)
[»] chr7 (11 HSPs)
chr7 (45-154)||(1575843-1575952)
chr7 (65-154)||(27392591-27392680)
chr7 (46-154)||(323603-323711)
chr7 (65-154)||(28694688-28694777)
chr7 (69-154)||(36482646-36482731)
chr7 (49-154)||(6714212-6714317)
chr7 (69-153)||(36582534-36582618)
chr7 (46-154)||(10286414-10286515)
chr7 (65-154)||(31280189-31280278)
chr7 (106-154)||(8937846-8937894)
chr7 (116-154)||(29988049-29988087)
[»] chr5 (14 HSPs)
chr5 (45-154)||(40987340-40987449)
chr5 (55-154)||(13554768-13554867)
chr5 (46-154)||(33160518-33160626)
chr5 (65-154)||(13521491-13521580)
chr5 (65-154)||(27110655-27110744)
chr5 (67-154)||(41061203-41061290)
chr5 (72-154)||(1495912-1495994)
chr5 (56-154)||(12291376-12291474)
chr5 (52-147)||(20210050-20210145)
chr5 (53-120)||(25932182-25932249)
chr5 (49-154)||(35449648-35449752)
chr5 (65-154)||(42716135-42716224)
chr5 (70-154)||(4986181-4986265)
chr5 (110-154)||(7946536-7946580)
[»] chr4 (20 HSPs)
chr4 (45-154)||(24575154-24575263)
chr4 (45-154)||(9279925-9280034)
chr4 (46-154)||(47498838-47498946)
chr4 (45-138)||(7700297-7700390)
chr4 (49-154)||(42414550-42414655)
chr4 (65-154)||(46251940-46252029)
chr4 (49-154)||(3756963-3757068)
chr4 (45-154)||(18780926-18781035)
chr4 (65-154)||(34276948-34277037)
chr4 (90-154)||(47997031-47997095)
chr4 (65-154)||(42429989-42430078)
chr4 (65-154)||(24859008-24859097)
chr4 (94-154)||(37602649-37602709)
chr4 (76-138)||(6184090-6184152)
chr4 (94-144)||(31568178-31568228)
chr4 (45-154)||(7611686-7611794)
chr4 (65-154)||(20580592-20580681)
chr4 (71-154)||(56078437-56078520)
chr4 (60-154)||(24319042-24319136)
chr4 (65-138)||(40436458-40436531)
[»] chr8 (17 HSPs)
chr8 (45-154)||(43620036-43620145)
chr8 (45-154)||(26721155-26721264)
chr8 (45-138)||(1265121-1265214)
chr8 (65-154)||(6345305-6345394)
chr8 (45-154)||(13470864-13470973)
chr8 (65-154)||(31127268-31127357)
chr8 (65-154)||(37948952-37949041)
chr8 (46-154)||(4602596-4602704)
chr8 (54-154)||(32906903-32907003)
chr8 (70-154)||(26721290-26721374)
chr8 (49-154)||(4267345-4267450)
chr8 (65-154)||(3106183-3106272)
chr8 (45-154)||(42200065-42200174)
chr8 (45-154)||(10183231-10183339)
chr8 (70-149)||(27808983-27809062)
chr8 (59-154)||(3773822-3773915)
chr8 (65-105)||(40619728-40619768)
[»] chr6 (7 HSPs)
chr6 (45-154)||(7608279-7608388)
chr6 (46-154)||(21946710-21946818)
chr6 (65-154)||(16705374-16705456)
chr6 (59-154)||(3901145-3901240)
chr6 (76-154)||(10484409-10484487)
chr6 (73-154)||(10386152-10386232)
chr6 (65-149)||(33747876-33747960)
[»] chr2 (8 HSPs)
chr2 (45-154)||(16672012-16672122)
chr2 (46-154)||(18511557-18511658)
chr2 (68-154)||(21352330-21352416)
chr2 (45-148)||(7753802-7753902)
chr2 (49-154)||(42295812-42295916)
chr2 (114-154)||(10997252-10997292)
chr2 (70-154)||(22596075-22596159)
chr2 (70-143)||(34439851-34439924)
[»] chr3 (12 HSPs)
chr3 (45-138)||(37282644-37282737)
chr3 (46-154)||(32055869-32055977)
chr3 (45-138)||(19636545-19636638)
chr3 (46-154)||(25706301-25706410)
chr3 (49-154)||(1030461-1030566)
chr3 (45-154)||(19997374-19997484)
chr3 (45-154)||(29283000-29283104)
chr3 (70-138)||(39717244-39717312)
chr3 (45-96)||(48973739-48973790)
chr3 (45-154)||(27167802-27167910)
chr3 (90-154)||(40166829-40166893)
chr3 (65-143)||(48085314-48085392)
[»] scaffold0034 (1 HSPs)
scaffold0034 (72-154)||(47780-47862)
[»] scaffold0717 (1 HSPs)
scaffold0717 (70-154)||(5490-5574)
[»] scaffold0396 (1 HSPs)
scaffold0396 (49-138)||(1267-1356)
[»] scaffold0140 (1 HSPs)
scaffold0140 (69-154)||(15490-15575)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 234 - 387
Target Start/End: Original strand, 3091650 - 3091803
Alignment:
Q  234 tcctacctacccgaagatgttatatgcgtatttttggaagacattcaaaattctttggtactattgatatgaatatacacaatttaaaataaattattgc 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  3091650 tcctacctacccgaagatgttatatgcgtatttttggaagacattcaaaattctttggtactagtgatatgaatatacaaaatttaaaataaattattgc 3091749  T
Q  334 aatatctcatcccatatttatccttaatttgcagaaacaaaaaatgcatatttt 387  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3091750 aatatctcatcccatatttatccttaatttgcaaaaacaaaaaatgcatatttt 3091803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 407 - 538
Target Start/End: Original strand, 3092852 - 3092983
Alignment:
Q  407 tcaaaataaccaatcaaaatttgcatctaagagaatcaactctgagatggaatgtattctacggtccaaaaattatatttcttttcactttagatcactg 506  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3092852 tcaaaataaccaatcaaaatttgcatctaagagaatcaactcggagatggaatgtattctacggtccaaaaattatatttcttttcactttagatcactg 3092951  T
Q  507 aaattgttgacagggtgaaaatccattcatgc 538  Q
    ||||||||||||||||||||||||||||||||    
T  3092952 aaattgttgacagggtgaaaatccattcatgc 3092983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 14461801 - 14461716
Alignment:
Q  69 cggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14461801 cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 14461716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 5559482 - 5559393
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5559482 ggttcggtttggttttgaaaatgcaatccgaaatctgatccgatcatggcggtttttccaaaacaacatccaaacacatccaaaaatatt 5559393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 24063911 - 24064008
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacaca 142  Q
    ||||||||| ||||||||| |||| | || ||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  24063911 ttacttttgtggttcggttcggtttgatttggttttgaaaaagtgatccgaaatccgatccaatcatagcggtttttccaaaacaacatccatacaca 24064008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 41198518 - 41198613
Alignment:
Q  59 cggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||| |||| ||||| |||||| ||| |  |||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||||    
T  41198518 cggttcggtttggttcagttttggaaaagtgatccgaaatccgatccgatcttagcggtttttacaaaacaacatccaatcacatccaaatatatt 41198613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 24614848 - 24614743
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    ||||||||||||||| |||| ||||||||||| |||| |  |||| ||||| ||||||||| ||||||||||| |||||| |||||||||  ||||||||    
T  24614848 ttttgcggttcggttcggtttggttcggttttaaaaaagtgatccaaaatctgatccgatcttagcggtttttacaaaacgacatccaaaagcatccaaa 24614749  T
Q  149 aatatt 154  Q
     |||||    
T  24614748 tatatt 24614743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 41074992 - 41074903
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||| ||||||||| | |  ||||||||| | ||| || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  41074992 ggttcggtttggttttgaagaggtgatccgaaattcaatctgaccatagcggttttttcaaaacaacatccaaacacatccaaaaatatt 41074903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 7004777 - 7004675
Alignment:
Q  52 tgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaat 151  Q
    ||||||||||||  ||| ||||||||||||||||  |||||| ||||||||||| |||  |||||||||  |||||   ||| ||||||||||||| |||    
T  7004777 tgcggttcggttcagtttggttcggttttgaaaaatcaatccaaaatccgatccaatccaagcggttttcacaaaatgtcattcaaacacatccaataat 7004678  T
Q  152 att 154  Q
    |||    
T  7004677 att 7004675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 33719608 - 33719698
Alignment:
Q  64 tggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||| |||| |||||||||| |  ||| |||||  ||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||||    
T  33719608 tggttcagttcagttttgaaaaagtgatctgaaatttgattcgatcctagcagtttttacaaaacaacatccaaacgcatccaaaaatatt 33719698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 16902667 - 16902572
Alignment:
Q  59 cggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||| |||| |||||||||||||||| |  |||| ||||   ||| |||| | || |||||| |||||||||||||||||||||| |||||||||    
T  16902667 cggttcggtttggttcggttttgaaaaagtgatccaaaatttaatctgatccttgcagtttttgcaaaacaacatccaaacacatctaaaaatatt 16902572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 28655668 - 28655580
Alignment:
Q  66 gttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||| |||||||| || |  ||| ||||| |||||||||| ||  | ||||| |||||||||||||||||||||| ||| |||||    
T  28655668 gttcggtttggttttgagaaagtgatctgaaattcgatccgatcctattgatttttacaaaacaacatccaaacacatcgaaatatatt 28655580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 11956335 - 11956375
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatcc 105  Q
    |||||||||||||||||||||  |||||| |||||||||||    
T  11956335 ggttcggttcggttttgaaaaatcaatccaaaatccgatcc 11956375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 8e-53; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 1575952 - 1575843
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1575952 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 1575853  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  1575852 caaaaatatt 1575843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 27392680 - 27392591
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27392680 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggttttttcaaaacaacatccaaacacatccaaaaatatt 27392591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 323603 - 323711
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    ||||||||||||||||||  ||| |||||||||||||||| |  ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  323603 tacttttgcggttcggttctgtttggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatcc 323702  T
Q  146 aaaaatatt 154  Q
    |||||||||    
T  323703 aaaaatatt 323711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 28694777 - 28694688
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||  |||||||||    
T  28694777 ggttcggtttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacatccaaacacataaaaaaatatt 28694688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 36482646 - 36482731
Alignment:
Q  69 cggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||||||||||||  |||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  36482646 cggttcggttttgaaaagacaatccgaaaaccgatccgatcatagtggtttttctaaaacaacatccaaacacatccaaaaatatt 36482731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 6714212 - 6714317
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    |||||||||| ||||||||||||||| ||||||| || |  || ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  6714212 ttttgcggtttggtttggttcggttcagttttgagaaagtgattcgaaatccgatccgatcctagcggtttttacaaaataacatccaaacacatccaaa 6714311  T
Q  149 aatatt 154  Q
     |||||    
T  6714312 tatatt 6714317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 36582534 - 36582618
Alignment:
Q  69 cggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatat 153  Q
    ||||||||||||||||| |  ||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||||||| ||||    
T  36582534 cggttcggttttgaaaaagtgatccgaaatccgatcagatcttagcggtttttacaaaacaacatccaaacgcatccaaatatat 36582618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 10286515 - 10286414
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| |||| |||||||||||||||| |  |||||||       || || ||||||||||| ||||||||||||||||||||||||    
T  10286515 tacttttgcggttcggttcggtttggttcggttttgaaaaggtgatccgaa-------ccaattatagcggttttgccaaaacaacatccaaacacatcc 10286423  T
Q  146 aaaaatatt 154  Q
    |||||||||    
T  10286422 aaaaatatt 10286414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 31280189 - 31280278
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||||||||||||| |  |||| ||||||||||||||| || || ||||| |||||||||||||||||  ||||||| |||||    
T  31280189 ggttcggttcggttttgaaaaagtgatccaaaatccgatccgatcttaacgatttttacaaaacaacatccaaacgtatccaaatatatt 31280278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 8937846 - 8937894
Alignment:
Q  106 gatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||||||||    
T  8937846 gatcctagcggtttttacaaaacaacatccaaacgcatccaaaaatatt 8937894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 29988049 - 29988087
Alignment:
Q  116 gtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  29988049 gtttttacaaaacaacatccaaacacatccaaaaatatt 29988087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 8e-53; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 40987449 - 40987340
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40987449 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 40987350  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  40987349 caaaaatatt 40987340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 13554867 - 13554768
Alignment:
Q  55 ggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||||||||  || ||||||||||||||||||||||||||||||||||| |||||||||    
T  13554867 ggttcggcttggtttggttcggttttgaaaatgcaattcgaaatccgatctaattatagcggtttttccaaaacaacatccaaacacatctaaaaatatt 13554768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 33160626 - 33160518
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| |||| |||||| ||||||||| |  ||||||||||||| | ||||||| | |||||||||||||||| |||||||||||||    
T  33160626 tacttttgcggttcggttcggtttggttcgattttgaaaaggtgatccgaaatccgaactgatcataacagtttttccaaaacaacctccaaacacatcc 33160527  T
Q  146 aaaaatatt 154  Q
    |||||||||    
T  33160526 aaaaatatt 33160518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 13521580 - 13521491
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||||||||||||||||||||||  |||||||||||   ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  13521580 ggttcggttcggttttgaaaatgcaatttgaaatccgatctagtcatagcggttattccaaaacaacatctaaacacatccaaaaatatt 13521491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 27110744 - 27110655
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||||||||| ||| |  ||||  |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||    
T  27110744 ggttcggttcggttttggaaaagtgatccagaatccgatccgatcttagcggtttttacaaaacaacatccaaacacatccaaatatatt 27110655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 41061290 - 41061203
Alignment:
Q  67 ttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||||||||||| | ||||| ||||||| ||||||| ||||||||||| |||||||| |||||||| |||||||| |||||    
T  41061290 ttcggttcggttttgaaaaagtaatccaaaatccgttccgatcttagcggtttttacaaaacaatatccaaacgcatccaaatatatt 41061203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 1495912 - 1495994
Alignment:
Q  72 ttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||||||||| |  |||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||    
T  1495912 ttcggttttgaaaaggtgatccgaaacccgatccgatcttagcggtttttacaaaacaatatccaaacacatccaaatatatt 1495994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 12291376 - 12291474
Alignment:
Q  56 gttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| ||||||||||||||||| |||||||     ||| ||||||||||| ||| ||| ||||||| ||||||||||||||||  ||||||||||||||    
T  12291376 gttcagtttggttcggttcggtattgaaaaaatggtccaaaatccgatccaatcttagaggtttttacaaaacaacatccaaatgcatccaaaaatatt 12291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 20210050 - 20210145
Alignment:
Q  52 tgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaa 147  Q
    ||||||||||||||||| |||| |||||||||||| |||||| |||| |||||| |||  |||||||||   |||| | ||||||||||| |||||    
T  20210050 tgcggttcggtttggtttggtttggttttgaaaattcaatccaaaatacgatccaatctgagcggttttcataaaatatcatccaaacacgtccaa 20210145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 25932249 - 25932182
Alignment:
Q  53 gcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttt 120  Q
    ||||||| |||||||| |||| |||||||||||| |||||| ||||||||||| |||  |||||||||    
T  25932249 gcggttctgtttggtttggtttggttttgaaaattcaatccaaaatccgatccaatccgagcggtttt 25932182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 35449648 - 35449752
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    |||||||||| |||  |||| |||||  ||||||||| |  |||| ||| |||| |||||| ||||||||||| ||||||||||||||||| |||| |||    
T  35449648 ttttgcggttaggtacggtttggttcaattttgaaaa-gtgatccaaaagccgaaccgatcttagcggtttttacaaaacaacatccaaacgcatctaaa 35449746  T
Q  149 aatatt 154  Q
     |||||    
T  35449747 tatatt 35449752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 42716135 - 42716224
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| ||||| |||||||||| | |||||||||||  |  ||||| ||||  ||||| ||||||||||||||||| ||| ||||||||||    
T  42716135 ggtttggttcagttttgaaaaagtaatccgaaatctaaatcgatcctagctttttttacaaaacaacatccaaacgcattcaaaaatatt 42716224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 4986265 - 4986181
Alignment:
Q  70 ggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||||||||||| |  |||| ||||| |||  |||| ||| ||||| | ||||||||||||||||| |||| |||||||||    
T  4986265 ggttcggttttgaaaaagtgatcctaaatctgatttgatcctagtggtttatacaaaacaacatccaaacgcatcaaaaaatatt 4986181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 7946536 - 7946580
Alignment:
Q  110 atagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||||||| ||||||||||| ||| | ||||||||||||||    
T  7946536 atagcggtttttacaaaacaacattcaagcgcatccaaaaatatt 7946580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 8e-53; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 24575154 - 24575263
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24575154 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 24575253  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  24575254 caaaaatatt 24575263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 9280034 - 9279925
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9280034 ttacttttgcggttaggttaggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacaaatc 9279935  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  9279934 caaaaatatt 9279925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 47498838 - 47498946
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| |||||||||||||||| |||| |  ||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  47498838 tacttttgcggttcggttcggttcggttcggttttaaaaaggtgatccgaaatccgaaccaatcatagcggtttttccaaaacaacatccaaacacatcc 47498937  T
Q  146 aaaaatatt 154  Q
    |||||||||    
T  47498938 aaaaatatt 47498946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 7700390 - 7700297
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    ||||||||| |||| ||||||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||||||||||    
T  7700390 ttacttttgtggtttggtttggttcggttcagttttgaaaacgcaatctgaaattcgatccgatcatagcggtttttctaaaacaacatccaaa 7700297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 42414550 - 42414655
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    ||||||||||||||| |||| |||||||||||||||| |  |||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  42414550 ttttgcggttcggttcggtttggttcggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaa 42414649  T
Q  149 aatatt 154  Q
     |||||    
T  42414650 tatatt 42414655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 46251940 - 46252029
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||||||||||||| |  ||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||    
T  46251940 ggttcggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagcggcttttccaaaacaacatccaaacacatccaaaaatatt 46252029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 3757068 - 3756963
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    |||||||||||| || |||| |||||||||||||||| |  |||||||||||||||||||| || ||||||||  |||||||||| ||||| ||||||||    
T  3757068 ttttgcggttcgattcggtttggttcggttttgaaaaagtgatccgaaatccgatccgatcttaacggtttttaaaaaacaacattcaaacgcatccaaa 3756969  T
Q  149 aatatt 154  Q
     |||||    
T  3756968 catatt 3756963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 18780926 - 18781035
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||  |||| ||||| ||   ||||||||| | ||| ||||||| |||| ||||||| ||||||||||||||||| || ||||||||||    
T  18780926 ttacttttgcggtttagtttagttcgattttattttgaaaacgtaattcgaaatctgatctgatcataacggtttttccaaaacaaaattcaaacacatc 18781025  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  18781026 caaaaatatt 18781035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 34277037 - 34276948
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||| ||||||||| |  ||||  ||| |||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||    
T  34277037 ggttcggttcgattttgaaaaagtgatccagaattcgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaatatatt 34276948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 47997031 - 47997095
Alignment:
Q  90 atccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||| |||||||||    
T  47997031 atccgaaatccgatccgatcctagcggtttttacaaaacaacattcaagcacatcgaaaaatatt 47997095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 42430078 - 42429989
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| |||| ||||||||||| |  ||||||||| ||||||||||  |||||||||| |||||||||||||||||  ||||||| |||||    
T  42430078 ggtttggtttggttttgaaaaagtgatccgaaattcgatccgatctgagcggtttttacaaaacaacatccaaacggatccaaatatatt 42429989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 24859097 - 24859008
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||||||||||||||||  |||||| ||||||||||| |||  | |||||||  |||||   ||||||||||||||||| ||||||    
T  24859097 ggttcggttcggttttgaaaaatcaatccaaaatccgatccaatccaaacggttttcacaaaatgtcatccaaacacatccaataatatt 24859008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 37602649 - 37602709
Alignment:
Q  94 gaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||| ||||||||| |||| |||||| ||||| ||||| ||||||||||||||||||||    
T  37602649 gaaatcagatccgatcctagcagtttttacaaaagaacattcaaacacatccaaaaatatt 37602709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 6184090 - 6184152
Alignment:
Q  76 gttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    |||||||||| |  |||||||||||||||||||| || || ||||| ||||||||||||||||    
T  6184090 gttttgaaaaagtgatccgaaatccgatccgatcctaacgatttttacaaaacaacatccaaa 6184152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 31568178 - 31568228
Alignment:
Q  94 gaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||| || ||||||||||| ||||||||||||||| ||||||    
T  31568178 gaaatccgatccggtcttagcggtttttacaaaacaacatccaaccacatc 31568228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 7611794 - 7611686
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||| | ||||||||| ||| ||||||||||||| ||    ||| |||||| |||| |||| ||||||||||| ||||| || |||||||| || |    
T  7611794 ttacttttacagttcggtttagtttggttcggttttgagaaaatgatctgaaatctgatctgatcctagcggtttttacaaaataa-atccaaacgcaac 7611696  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  7611695 caaaaatatt 7611686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 20580681 - 20580592
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| |||| ||||||||||| |  ||| |||||||||||||||| ||||  || || ||||||||||| ||| | ||||||||||||||    
T  20580681 ggtttggtttggttttgaaaaagtgatctgaaatccgatccgatcctagcaattcttacaaaacaacattcaagcgcatccaaaaatatt 20580592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 56078520 - 56078437
Alignment:
Q  71 gttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||||||| |  ||  ||||||||||||||||| | |  ||||| | ||||||||||||||| ||||| ||||||||    
T  56078520 gttcggttttgaaaaagtgatttgaaatccgatccgatcacaacaatttttactaaacaacatccaaacgcatccgaaaatatt 56078437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 24319136 - 24319042
Alignment:
Q  60 ggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| |||| ||||||||||||| || |  |||| |||| | | |||||| || |||||||   |||||||||||||||| ||||||||||||||    
T  24319136 ggttcggtttggttcggttttgagaaagtgatccaaaattcaaaccgatcctaacggttttgataaaacaacatccaaacgcatccaaaaatatt 24319042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 40436531 - 40436458
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    ||||||||| ||||||||||| |  ||||||| ||||||| |||| || |  ||||| ||||||||||||||||    
T  40436531 ggttcggtttggttttgaaaaagtgatccgaagtccgatctgatcgtaacaatttttacaaaacaacatccaaa 40436458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 43620036 - 43620145
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43620036 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaagcaacatccaaacacatc 43620135  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  43620136 caaaaatatt 43620145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 26721155 - 26721264
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  26721155 ttacttttgcggtttggtttggttcggttcggttttgaaaacgcaatccaaaataagatccgatcatagcggtttttccaaaacaacatccaaacacatc 26721254  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  26721255 caaaaatatt 26721264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 1265214 - 1265121
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1265214 ttacttttgcggttcggtttggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 1265121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 6345394 - 6345305
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6345394 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 6345305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 13470973 - 13470864
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||| ||||||||| |||||||||||||||| |||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  13470973 ttacttttgcggtttggtttggtttggttcggttttgaaaaggcaaaccgaaaaccgatccgatcgtagcgttttttccaaaacaacatccaaacacatc 13470874  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  13470873 caaaaatatt 13470864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 31127268 - 31127357
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31127268 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 31127357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 37948952 - 37949041
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37948952 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 37949041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 4602704 - 4602596
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| |||| ||||||||||||||||||  ||||||||||||| || |||||||||||||| |||||||||||||||||||| |||    
T  4602704 tacttttgcggttcggttcggtttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacgtcc 4602605  T
Q  146 aaaaatatt 154  Q
    |||||||||    
T  4602604 aaaaatatt 4602596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 32907003 - 32906903
Alignment:
Q  54 cggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatat 153  Q
    |||||||||| |||| ||||||||||||||||||  ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  32907003 cggttcggttcggtttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatccaaaaatat 32906904  T
Q  154 t 154  Q
    |    
T  32906903 t 32906903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 26721290 - 26721374
Alignment:
Q  70 ggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||||||||||| ||||||||||||| |||  |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26721290 ggttcggttttgaaaacgcaatccgaaatctgatttgatcatagcggtttttccaaaacaacgtccaaacacatccaaaaatatt 26721374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 4267450 - 4267345
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    ||||||||||||||| |||| |||||||||||||||| |  |||| ||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||    
T  4267450 ttttgcggttcggttcggtttggttcggttttgaaaaggtgatccaaaatccgatccgatcttagcggtttttacaaaataacatccaaacgcatccaaa 4267351  T
Q  149 aatatt 154  Q
     |||||    
T  4267350 tatatt 4267345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 3106272 - 3106183
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||||||||||||| || |  |||| ||||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||||    
T  3106272 ggttcggttcggttttgagaaagtgatccaaaatccgatacgatcctagcagtttttacaaaacaacatccaaacgcatccaaaaatatt 3106183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 42200065 - 42200174
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||| |||| | |  ||| |||| || |  ||||||||| ||||||||||||| ||||||||  |||||||||||||||||||||    
T  42200065 ttacttttgcggttcggttcggtttgatctggtattgagaaagtgatccgaaattcgatccgatcataacggtttttataaaacaacatccaaacacatc 42200164  T
Q  145 caaaaatatt 154  Q
     |||||||||    
T  42200165 taaaaatatt 42200174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 10183231 - 10183339
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||| |||| ||||||||| | |||  |||||||||  | || ||||||||||||| ||| || | ||||||   ||||||||||||||||||||    
T  10183231 ttacttttgtggttaggtttggtttgattca-ttttgaaaaatcgattcgaaatccgatccaatcttaacagtttttaggaaacaacatccaaacacatc 10183329  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  10183330 caaaaatatt 10183339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 27808983 - 27809062
Alignment:
Q  70 ggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 149  Q
    |||||||||||||||| |   || |||||||||||||||| || |||||||| | || |||||| |||||||||||||||    
T  27808983 ggttcggttttgaaaaagtggtctgaaatccgatccgatcttaacggtttttactaaccaacattcaaacacatccaaaa 27809062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 3773915 - 3773822
Alignment:
Q  59 cggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||| |||| |||| ||||||||||| |  |||| ||||||||||| ||| ||| ||||||| |||| |||||||||||| |||||||| |||||    
T  3773915 cggttcggtttggtttggttttgaaaaagtgatccaaaatccgatcc-atcttagtggtttttacaaa-caacatccaaacgcatccaaatatatt 3773822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 40619728 - 40619768
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatcc 105  Q
    |||||||||||||||||||||  |||||| |||||||||||    
T  40619728 ggttcggttcggttttgaaaaatcaatccaaaatccgatcc 40619768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 7608279 - 7608388
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7608279 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacaaatc 7608378  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  7608379 caaaaatatt 7608388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 21946818 - 21946710
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    ||||||||||||||||||||||| ||||||||||||||||    ||||||||||||| || || |||||||||||||||||||||||||||||||||||     
T  21946818 tacttttgcggttcggtttggtttggttcggttttgaaaagctgatccgaaatccgaaccaattatagcggtttttccaaaacaacatccaaacacatca 21946719  T
Q  146 aaaaatatt 154  Q
    |||||||||    
T  21946718 aaaaatatt 21946710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 16705374 - 16705456
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||||||||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16705374 ggttcggttcggttttgaaaacgcaatc-------cgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 16705456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 3901145 - 3901240
Alignment:
Q  59 cggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||| |||||||||||||||| |||| |  ||||||| ||| ||| |||| | ||||||||  ||||||||||||||||||||||||||||||||    
T  3901145 cggttcggttcggttcggttttaaaaaagtgatccgaagtccaatctgatcttggcggttttggcaaaacaacatccaaacacatccaaaaatatt 3901240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 10484409 - 10484487
Alignment:
Q  76 gttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||| || |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||  |||||||||    
T  10484409 gttttgagaaagcaatccgaaatccaatccgatcatagcggtttttagaagacaacatccaaacgcattaaaaaatatt 10484487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 10386232 - 10386152
Alignment:
Q  73 tcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||||| |  ||||||||||||||  |||| ||||||||||| ||||||||||||| ||  ||||||||| ||||    
T  10386232 tcggttttgaaaa-gtgatccgaaatccgatatgatcctagcggtttttacaaaacaacatccgaatgcatccaaaagtatt 10386152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 33747960 - 33747876
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 149  Q
    ||||| ||| ||||||||||| || |||||||||  ||||| ||| ||||| ||| | ||||||||| || ||||||||||||||    
T  33747960 ggttcagttaggttttgaaaaagctatccgaaatatgatccaatcttagcgctttctacaaaacaacttctaaacacatccaaaa 33747876  T

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Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 16672122 - 16672012
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaa-acacat 143  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  16672122 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcagtttttccaaaacaacatccaacacacat 16672023  T
Q  144 ccaaaaatatt 154  Q
    |||||||||||    
T  16672022 ccaaaaatatt 16672012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 18511658 - 18511557
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| |||| |||||||||||||||| |  |||||||       || || ||||||||||| ||||||||||||||||||||||||    
T  18511658 tacttttgcggttcggttcggtttggttcggttttgaaaaggtgatccgaa-------ccaattatagcggttttgccaaaacaacatccaaacacatcc 18511566  T
Q  146 aaaaatatt 154  Q
    |||||||||    
T  18511565 aaaaatatt 18511557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 68 - 154
Target Start/End: Original strand, 21352330 - 21352416
Alignment:
Q  68 tcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||| |||||||||||| |  |||| ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||    
T  21352330 tcggtacggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaatatatt 21352416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 7753902 - 7753802
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||| ||||| ||||||||| |||  ||| ||||||||||| |  ||| |||||||||||||||||||   |||||| |||||||||||| |||||||||    
T  7753902 ttacctttgcagttcggttttgttttgtttggttttgaaaaagttatctgaaatccgatccgatcata---gtttttacaaaacaacatcaaaacacatc 7753806  T
Q  145 caaa 148  Q
    ||||    
T  7753805 caaa 7753802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 42295812 - 42295916
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    |||||| |||||||| |||| |||||| ||||||||| |  |||||||| |||| |||||| |||| |||||| ||||||||||| ||||| ||||||||    
T  42295812 ttttgcagttcggttcggtttggttcgattttgaaaa-gtgatccgaaagccgaaccgatcttagcagtttttacaaaacaacatacaaacgcatccaaa 42295910  T
Q  149 aatatt 154  Q
     |||||    
T  42295911 tatatt 42295916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 10997292 - 10997252
Alignment:
Q  114 cggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  10997292 cggtttttacaaaacaacatccaaacacatccaaaaatatt 10997252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 22596159 - 22596075
Alignment:
Q  70 ggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| ||||||||||| |  ||||||||||||||| |||| ||||| ||||| |||||||||||| |||  |||||||| |||||    
T  22596159 ggtttggttttgaaaaagtgatccgaaatccgatctgatcttagcgatttttacaaaacaacatcgaaatgcatccaaatatatt 22596075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 34439924 - 34439851
Alignment:
Q  70 ggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacat 143  Q
    |||||||||||||||| | |||||| |||||||||| ||  ||||||||||| ||||  ||||| |||||||||    
T  34439924 ggttcggttttgaaaaagtaatccggaatccgatccaattctagcggtttttacaaactaacattcaaacacat 34439851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 37282644 - 37282737
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37282644 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 37282737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 32055869 - 32055977
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| | || ||||||||||||||||||  ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  32055869 tacttttgcggttcggttcgatttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatcc 32055968  T
Q  146 aaaaatatt 154  Q
    |||||||||    
T  32055969 aaaaatatt 32055977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 19636545 - 19636638
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  19636545 ttacttttgcggttgggtttggttcggttcggttttgaaaactcaatccgaaatccgatccgatcatcgcggcttttccaaaacaacatccaaa 19636638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 25706410 - 25706301
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggt-ttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||||||| |||| |||||||||||||||| |  ||| ||| ||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  25706410 tacttttgcggttcggttcggtttggttcggttttgaaaaggttatctgaagtccgaaccgatcatagcggtttttttcaaaacaacatccaaacacatc 25706311  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  25706310 caaaaatatt 25706301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 1030566 - 1030461
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    ||||||||||| ||| |||| |||||||||| ||||| |  |||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  1030566 ttttgcggttcagttcggtttggttcggtttcgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaa 1030467  T
Q  149 aatatt 154  Q
     |||||    
T  1030466 tatatt 1030461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 19997484 - 19997374
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccg-aaatccgatccgatcatagcggtttttccaaaacaacatccaaacacat 143  Q
    ||||||||||||||| ||| |||| |||||||||||||||| |  ||||| ||||||||||||||| |||| |||||| | | |||||||| |||| |||    
T  19997484 ttacttttgcggttcagttcggtttggttcggttttgaaaaagtgatccgaaaatccgatccgatcttagcagtttttacgagacaacatctaaacgcat 19997385  T
Q  144 ccaaaaatatt 154  Q
    ||||| |||||    
T  19997384 ccaaatatatt 19997374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 29283104 - 29283000
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||| ||||||||||  |||||| || |  |||||||||||| |||     ||||||||||| ||||||||||||||||  ||||    
T  29283104 ttacttttgcggttcggttcggttcggttcaattttgagaaagtgatccgaaatccgttcc-----tagcggtttttacaaaacaacatccaaatgcatc 29283010  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  29283009 caaaaatatt 29283000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 39717244 - 39717312
Alignment:
Q  70 ggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    ||||||||||| |||| |  |||| |||||||| |||||||||||||||||||||| ||||||||||||    
T  39717244 ggttcggttttcaaaaggtgatccaaaatccgaaccgatcatagcggtttttccaatacaacatccaaa 39717312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 48973739 - 48973790
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaa 96  Q
    |||||||||| ||||||||||||||||||||||||| |||| | ||||||||    
T  48973739 ttacttttgcagttcggtttggttcggttcggttttcaaaaggaaatccgaa 48973790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 27167802 - 27167910
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||||| ||||||| | |||  |||| |||| |  ||| ||||||||||  || | ||||||||||| ||||||| ||| ||||| ||||    
T  27167802 ttacttttgcggttcgatttggtttgattcaattttaaaaaagtgatctgaaatccgatatgacc-tagcggtttttacaaaacagcattcaaacgcatc 27167900  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  27167901 caaaaatatt 27167910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 40166829 - 40166893
Alignment:
Q  90 atccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||| ||||||||  ||| ||||||||||| ||||||||||| |||||||||| ||| |||||    
T  40166829 atccgatatccgatcgaatcttagcggtttttacaaaacaacattcaaacacatctaaatatatt 40166893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 48085314 - 48085392
Alignment:
Q  65 ggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacat 143  Q
    |||| |||||||||||||||| |  ||||||||||||||  |||   | || ||||| |||||||||||||||||||||    
T  48085314 ggtttggttcggttttgaaaaagtgatccgaaatccgatttgataccatcgctttttacaaaacaacatccaaacacat 48085392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 47780 - 47862
Alignment:
Q  72 ttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||| || |  ||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  47780 ttcggttttgagaaagtgatccgaaatccgatctgatcatagcgatttttacaaaacaacatccaaacacatccacaaatatt 47862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 5574 - 5490
Alignment:
Q  70 ggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| ||||||||||| |  |||  ||||||||||||||| ||||| || || ||||||||||||||| | ||||||||||||||    
T  5574 ggtttggttttgaaaaagtgatcttaaatccgatccgatcctagcgattcttacaaaacaacatccaagcgcatccaaaaatatt 5490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 1267 - 1356
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    |||||||||| |||| ||||   |||| ||||||||| |  |||||||||||||| ||||| ||||||| ||| |||||||| |||||||    
T  1267 ttttgcggtttggttcggtttaattcgattttgaaaaagtgatccgaaatccgattcgatcttagcggtgtttacaaaacaatatccaaa 1356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 15575 - 15490
Alignment:
Q  69 cggttcggttttgaaaatgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||| ||||||||||| |  ||||||||||  |||||||| ||||  ||||| |||||||||| |||||| |||| |||||||||    
T  15575 cggtttggttttgaaaaagttatccgaaatctaatccgatcctagctatttttacaaaacaacaaccaaacgcatctaaaaatatt 15490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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