View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_low_5 (Length: 499)
Name: NF13085_low_5
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 218 - 480
Target Start/End: Original strand, 42306481 - 42306743
Alignment:
| Q |
218 |
agttcacacctatcccccacatgttccccacccagtttaccattctcctcctcctccagttcattccccacctccaccacactattactacaaatcacct |
317 |
Q |
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| T |
42306481 |
agttcacacctatcccccacatgttccccacccagtttaccattctcctcctcctccagttcattccccacctccaccacactattactacaaatcacct |
42306580 |
T |
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| Q |
318 |
cctccaccttaccacaactagatagcccataattggcatcacaccatatggtaacttttcatgcaacatatatattataacttttcatattctctcttta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42306581 |
cctccaccttaccacaactagatagcccataattggcatcacaccatatggtaacttttcatgcaacatatatattataacttttcatattctctcttta |
42306680 |
T |
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| Q |
418 |
ttaactagttatcggtatgattgtcgagtatatactaacaaggctaatttgaaatgaaacttc |
480 |
Q |
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| T |
42306681 |
ttaactagttatcggtatgattgtcgagtatatactaacaaggctaatttgaaatgaaacttc |
42306743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 42306186 - 42306215
Alignment:
| Q |
16 |
caccaccaccaccaaagaagtcctacaaat |
45 |
Q |
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| T |
42306186 |
caccaccaccaccaaagaagtcctacaaat |
42306215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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