View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_low_6 (Length: 485)
Name: NF13085_low_6
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_6 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 8696158 - 8696608
Alignment:
| Q |
18 |
caaatccaacatatctgctgtgcttgtttgctgccaaattagaagtactaagttactaaaatgtatataaactatgtagcaccgacactttagattgaag |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
8696158 |
caaatccaacatatctgctgtgcttgtttgctgcgaaattagaagtactaagttactgaaatgtatataaactatgtaccaccgtcactttagattgaag |
8696257 |
T |
|
| Q |
118 |
acatgtccggtgtatgagacaagtggtgtttgagacggacacatatgacattcaattactttcattttttaaagtcattactgatgtcggtgccagtgtc |
217 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8696258 |
acatgtccggtgtatgagacaagtggtgtctgagacggacacatatgacattcaattactttcattttttaaagtcattactgatgtcggtgccaatgtc |
8696357 |
T |
|
| Q |
218 |
atgtcctttatccatgtctgcgttactaaaatgcatatgatatgcttttgagaaggttaaaataccttatctgattttgggaaaagaccttgcagtttct |
317 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8696358 |
atgtcctgtatccatgtctgcgttactaaaatgcatatgatatgcttttgagaatgttaaaataccttatctgattttgggaaaagaccttgcagtttct |
8696457 |
T |
|
| Q |
318 |
tgattctgtcactaattcttgttcttctgacctgaaattttcagattaacatatatgaaactattgaatcacataggtttaataatagtaatgtagagta |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696458 |
tgattctgtcactaattcttgttcttctgacctgaaattttcagattaacatatatgaaactattgaatcacataggtttaataatagtaatgtagagta |
8696557 |
T |
|
| Q |
418 |
attaaacatttataattgtgagtactagtagtagaattttaccctctctgc |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8696558 |
attaaacatttataattgtgagtactagtagtagaattttaccctctctgc |
8696608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 9048045 - 9048495
Alignment:
| Q |
18 |
caaatccaacatatctgctgtgcttgtttgctgccaaattagaagtactaagttactaaaatgtatataaactatgtagcaccgacactttagattgaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
9048045 |
caaatccaacatatctgctgtgcttgtttgctgcgaaattagaagtactaagttactgaaatgtatataaactatgtaccaccgtcactttagattgaag |
9048144 |
T |
|
| Q |
118 |
acatgtccggtgtatgagacaagtggtgtttgagacggacacatatgacattcaattactttcattttttaaagtcattactgatgtcggtgccagtgtc |
217 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9048145 |
acatgtccggtgtatgagacaagtggtgtctgagacggacacatatgacattcaattactttcattttttaaagtcattactgatgtcggtgccaatgtc |
9048244 |
T |
|
| Q |
218 |
atgtcctttatccatgtctgcgttactaaaatgcatatgatatgcttttgagaaggttaaaataccttatctgattttgggaaaagaccttgcagtttct |
317 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9048245 |
atgtcctgtatccatgtctgcgttactaaaatgcatatgatatgcttttgagaatgttaaaataccttatctgattttgggaaaagaccttgcagtttct |
9048344 |
T |
|
| Q |
318 |
tgattctgtcactaattcttgttcttctgacctgaaattttcagattaacatatatgaaactattgaatcacataggtttaataatagtaatgtagagta |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9048345 |
tgattctgtcactaattcttgttcttctgacctgaaattttcagattaacatatatgaaactattgaatcacataggtttaataatagtaatgtagagta |
9048444 |
T |
|
| Q |
418 |
attaaacatttataattgtgagtactagtagtagaattttaccctctctgc |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9048445 |
attaaacatttataattgtgagtactagtagtagaattttaccctctctgc |
9048495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 116
Target Start/End: Original strand, 25204148 - 25204178
Alignment:
| Q |
86 |
aaactatgtagcaccgacactttagattgaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
25204148 |
aaactatgtagcaccgacactttagattgaa |
25204178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 3015059 - 3015019
Alignment:
| Q |
89 |
ctatgtagcaccgacactttagattgaagacatgtccggtg |
129 |
Q |
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||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
3015059 |
ctatgtagcactgacacttcagattgaagacgtgtccggtg |
3015019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 42252184 - 42252220
Alignment:
| Q |
88 |
actatgtagcaccgacactttagattgaagacatgtc |
124 |
Q |
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|||||||||||||||||||| ||||||||| |||||| |
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| T |
42252184 |
actatgtagcaccgacacttcagattgaaggcatgtc |
42252220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 22016103 - 22016074
Alignment:
| Q |
88 |
actatgtagcaccgacactttagattgaag |
117 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
22016103 |
actatgtagcaccgacactttagattgaag |
22016074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 47126378 - 47126345
Alignment:
| Q |
84 |
ataaactatgtagcaccgacactttagattgaag |
117 |
Q |
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|
|||||||||||| ||||||||||||||||||||| |
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| T |
47126378 |
ataaactatgtatcaccgacactttagattgaag |
47126345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 12174 - 12206
Alignment:
| Q |
92 |
tgtagcaccgacactttagattgaagacatgtc |
124 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
12174 |
tgtagcaccgacactttagattgaaggcatgtc |
12206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 21188766 - 21188806
Alignment:
| Q |
84 |
ataaactatgtagcaccgacactttagattgaagacatgtc |
124 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||| |||| |
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|
| T |
21188766 |
ataacctatgtagcacagacactttagattgaagacgtgtc |
21188806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 33267956 - 33267924
Alignment:
| Q |
85 |
taaactatgtagcaccgacactttagattgaag |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
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| T |
33267956 |
taaactatgtagcaccgacacttcagattgaag |
33267924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 2073834 - 2073866
Alignment:
| Q |
87 |
aactatgtagcaccgacactttagattgaagac |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
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| T |
2073834 |
aactatgtaacaccgacactttagattgaagac |
2073866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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