View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_low_7 (Length: 467)
Name: NF13085_low_7
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 37760406 - 37760276
Alignment:
| Q |
19 |
caaaggtagcctatacatcatcaactatacaagttttcgagttttaaccatcaacttgttgatttgataaataaatatactaacttaatacatgtaatga |
118 |
Q |
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| T |
37760406 |
caaaggtaacctatacatcatcaactatacaagttttcgagttttaaccatcaacttgttgatttgataaataaacatactaacttaatacatgtaatga |
37760307 |
T |
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| Q |
119 |
tcggtccaaatttcaaacataaaactgcata |
149 |
Q |
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| T |
37760306 |
tcagtccaaatttcaaacataaaactgcata |
37760276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 363 - 429
Target Start/End: Complemental strand, 37760055 - 37759989
Alignment:
| Q |
363 |
tattttaggaatttgttaagcagtcagttggcattgatgtggactggatttgaacactcatccaaca |
429 |
Q |
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| T |
37760055 |
tattttatgaatttgttaagcagtcagttggcattgatgtggaatggatttgaacactcatccaaca |
37759989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 37760135 - 37760092
Alignment:
| Q |
285 |
atagagtaatatagaaatgaaaattctgcaaacccttctttact |
328 |
Q |
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| T |
37760135 |
atagagtaatatagaaatgaaaattctgcaaacccttctttact |
37760092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 37760233 - 37760196
Alignment:
| Q |
188 |
gaaagaggtacattattttgttgtcgagtgttagagac |
225 |
Q |
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| T |
37760233 |
gaaagaggtgcattattttgttgtcgagtgttagagac |
37760196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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