View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_low_8 (Length: 414)
Name: NF13085_low_8
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 87 - 395
Target Start/End: Complemental strand, 10342681 - 10342373
Alignment:
| Q |
87 |
gttcttagaaatgcaattagaatataatcagattgaagatacagtgtatccacagtttcacacaattaatata-----tacagtttttactgtatttcac |
181 |
Q |
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| T |
10342681 |
gttcttagaaatgcaattagaatataatcagattgaagatacagtgtatccacagtttcacacaattaatataatatatacagtttttactgtatttcac |
10342582 |
T |
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| Q |
182 |
gtatggaagaagatattccaattcaaagcatagactttttccttaatatttggtaagagaatatatattttattttatacagtacaaatctgaacatgtt |
281 |
Q |
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| T |
10342581 |
gtatggatgaagatattccaattcaaagcatagacttattcctcaatatttggttagagaatatatattttat-----acagtacaaatctgaacatgtt |
10342487 |
T |
|
| Q |
282 |
ttcatgatataaactgatcttgtttccacacacctctttgtacaaatactactttcttgaaactttctgtaacaccacattggatgtatgaacaaaaatg |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10342486 |
ttcatgatataaactgatcttgtttccacacacctctttgtacaaatactaatttcttgaaactttctgtaacaccacattggatgtatgaacaaaaatg |
10342387 |
T |
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| Q |
382 |
caatatgctgcaac |
395 |
Q |
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|||||||||||||| |
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| T |
10342386 |
caatatgctgcaac |
10342373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31788469 - 31788381
Alignment:
| Q |
1 |
tagtggtggtgggatgaccggggctactggtcatggtcatggacatcatcaacaacatcatggagttggagttgatcaaaccacaggtt |
89 |
Q |
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| T |
31788469 |
tagtggtggtgggatgaccggtgctactggtcatggtcatggacatcatcaacaacatcatggagttggagttgatcaaaccacaggtt |
31788381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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