View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_low_9 (Length: 402)
Name: NF13085_low_9
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 44566390 - 44566707
Alignment:
| Q |
19 |
ccacattattcttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaattta |
118 |
Q |
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| T |
44566390 |
ccacattattcttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaattta |
44566489 |
T |
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| Q |
119 |
caggtgcctttgggtttggcagtcacatggacatttgcttttttgctgactgaaaacggccggatgaaacattgtcaagttaatacttctgatacaatga |
218 |
Q |
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| T |
44566490 |
caggtgcctttgggtttggcagtcacatggacatttgcttttttgctgactgaaaacggccggatgaaacattgtcaagttaatacttctgatacaatga |
44566589 |
T |
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| Q |
219 |
catcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattggaaaatggctattgtgatgtgcgtcgtttccttaatctc |
318 |
Q |
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| T |
44566590 |
catcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattggaaaatggctattgtgatgtgtgtcgtttccttaatctc |
44566689 |
T |
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| Q |
319 |
ttctgtggattcggttag |
336 |
Q |
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| T |
44566690 |
ttctgtggattcggttag |
44566707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 180 - 336
Target Start/End: Complemental strand, 36032553 - 36032397
Alignment:
| Q |
180 |
ggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattg |
279 |
Q |
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|||||||| |||||| |||| ||||||| || |||| | |||| |||||||||||| ||||||||||||| ||||||||||||||||||| ||| | || |
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| T |
36032553 |
ggatgaaatattgtcgagttgatacttcgcatgcaatcaaatcatccccatggtttaaatttccctatccattgcaatggggtactcctgtcttccactg |
36032454 |
T |
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| Q |
280 |
gaaaatggctattgtgatgtgcgtcgtttccttaatctcttctgtggattcggttag |
336 |
Q |
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| T |
36032453 |
gaaaatggctcttgtgatgtgtgtggtttccttaatctcatccgtggattcggttag |
36032397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 36032763 - 36032639
Alignment:
| Q |
52 |
gaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattat----tttctttacctaatttacaggtgcctttgggtttggcagtcacatg |
147 |
Q |
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||||||||||||||| |||||| ||||||||| ||||||||||| |||| ||| |||||||||||| ||||| ||||||||||||||| | ||||| |
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| T |
36032763 |
gaaaataaatttctgctgtgtaacaaatgatttctgttaagtgatgttatatattttttttacctaatttgcaggttcctttgggtttggcaattacatg |
36032664 |
T |
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| Q |
148 |
gacatttgcttttttgctgactgaa |
172 |
Q |
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| || ||||||| |||||||||||| |
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| T |
36032663 |
ggcagttgctttcttgctgactgaa |
36032639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 180 - 336
Target Start/End: Original strand, 20122450 - 20122606
Alignment:
| Q |
180 |
ggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattg |
279 |
Q |
| |
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||||||| ||||||| ||| |||||||| || || ||| ||| | ||||||||||||||||||||||| | ||||||||| |||||| || | || |
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| T |
20122450 |
ggatgaagcattgtcgggttgatacttctcatgcattgaaatcctctccatggtttagatttccctatccgttacaatggggtgttcctgtctttcactg |
20122549 |
T |
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| Q |
280 |
gaaaatggctattgtgatgtgcgtcgtttccttaatctcttctgtggattcggttag |
336 |
Q |
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|||||||||| |||| ||||| || |||||||||||||| || |||||||||||||| |
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| T |
20122550 |
gaaaatggctcttgtaatgtgtgtggtttccttaatctcatccgtggattcggttag |
20122606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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