View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13086_high_4 (Length: 215)
Name: NF13086_high_4
Description: NF13086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13086_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 23877600 - 23877396
Alignment:
| Q |
1 |
taaagttcacgttgaagtggcattgtgatgctagaattcaattgcaaacgccaaactaaacgattattaaatcattgagaccacaatagtataccaccag |
100 |
Q |
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| T |
23877600 |
taaaattcatgttgaagtggcattgtgatgctagaattcaattgcaaatgccaaactaaacgattattaaatcattgagaccacaatagtataccaccag |
23877501 |
T |
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| Q |
101 |
ctcatgtgacataagtctg-gaaacatctgt---ttctaccttttttcactacaaaacaagttctttcctaatttgtttctagagttgttgacaaccgta |
196 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23877500 |
ctcatgtgacataagtctgtgaaacatctgtttcttctaccttttttcactacaaaacaagttctttcctaatttgtttctagagttgttgacaaccgta |
23877401 |
T |
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| Q |
197 |
ttatt |
201 |
Q |
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||||| |
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| T |
23877400 |
ttatt |
23877396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 23421453 - 23421654
Alignment:
| Q |
7 |
tcacgttgaagtggcattgtgatgctagaattcaattgcaaacgccaaactaaacgattattaaatcattgagaccacaatagtataccaccagctcatg |
106 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23421453 |
tcacgttgaagtggcattgtgacgctagaattcaattgcaaacgccaaaccaaacaattattaaatcattgagactgcaatagtataccaccagctcatg |
23421552 |
T |
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| Q |
107 |
tgacat-aagtctg-gaaacatc--tgtttctaccttttttcactacaaaacaa---gttctttcctaatttgtttctagagttgttgacaaccgtatta |
199 |
Q |
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| T |
23421553 |
tgacataaagtctgtcaaacatctatttttctaccttttttcactgcaaaacaagttgttctttccttctttttttctagagttgttgccaaccgtatta |
23421652 |
T |
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| Q |
200 |
tt |
201 |
Q |
| |
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|| |
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| T |
23421653 |
tt |
23421654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 23877684 - 23877601
Alignment:
| Q |
1 |
taaagttcacgttgaagtggcattgtgatgctagaattcaattgcaaacgccaaactaaacgattattaaatcattgagaccac |
84 |
Q |
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|||| |||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23877684 |
taaaattcacgttaaagtggcattgtgacgctagaattcaattgcaaatgccaaactaaacgattattaaatcattgagaccac |
23877601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 37943457 - 37943416
Alignment:
| Q |
68 |
taaatcattgagaccacaatagtataccaccagctcatgtga |
109 |
Q |
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| T |
37943457 |
taaatcattgagtccacaatagtataccaccagctcatgtga |
37943416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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