View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13086_low_1 (Length: 427)
Name: NF13086_low_1
Description: NF13086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13086_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 36423974 - 36423580
Alignment:
| Q |
18 |
attcctagtttgatgaatctgtaataagacagtgattatgtcatgagtactgaaattattaccttaatgtcagtgattggacactcggcgtgtcgccaag |
117 |
Q |
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| T |
36423974 |
attcctagtttgatgaatctgtaataagacagtgattatgtcatgagtactgaaattattaccttaatgtcagtgattggacactcggcgtgtcgccaag |
36423875 |
T |
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| Q |
118 |
caatgtcaccagcataactctcaaaaatgcaaatcatgtttggttgaacatatggtgttccatcagcagaagtaaacactccatccatgtagtaagcatt |
217 |
Q |
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| T |
36423874 |
caatgtcaccagcataactctcaaaaatgcaaatcatgtttggttgaacatatggtgttccatcagcagaagtaaacactccatccatgtagtaagcatt |
36423775 |
T |
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| Q |
218 |
ccttggacaatcatttaaagggtctaaaggcattgcttgcaaaccaaatccatactcaccagcatccatgtatgtcttaaaataccatccatcagtagga |
317 |
Q |
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| T |
36423774 |
tcttggacaatcatttaaagggtctaaaggcattgcttgcaaaccaaatccatactcaccagcatccatgtatgtcttaaaataccatccatcagtagga |
36423675 |
T |
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| Q |
318 |
tccatataaggcacaaaaagttcagaagtgaaccctttgtaaataacatttctcatctctaatgtatctggatctctcactttagcttgagaaat |
412 |
Q |
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| T |
36423674 |
tccatataaggcacaaaaagttcagaagtgaaccctttgtaaataacatttctcatctctaatgtatctggatctctcactttagcttgagaaat |
36423580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 20538310 - 20538272
Alignment:
| Q |
117 |
gcaatgtcaccagcataactctcaaaaatgcaaatcatg |
155 |
Q |
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| T |
20538310 |
gcaacgtcaccagcataactctcaaaaatgcaaatcatg |
20538272 |
T |
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