View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13086_low_3 (Length: 251)
Name: NF13086_low_3
Description: NF13086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13086_low_3 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 23878145 - 23877902
Alignment:
| Q |
8 |
agattattctgcagcaannnnnnnaatatttacagcaaacttggaattaaactacagttttataattgtggtaaagttctatacatagtcaattttctgg |
107 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23878145 |
agattattctgcagcaatttttttactatttacagcaaacttggaattaaactacagttttataattgtggtaaagttctatacatagtcaattttctgg |
23878046 |
T |
|
| Q |
108 |
tttatcaaactcaacttaggagaaataggtctcaagctttttcaaaaatgttaactagtgcacattggcaaatggactttaaagtataaatctcttgtac |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23878045 |
tttatcaaactcagcttaggagaaataggtctcaagctttttcaaaaatgttaactagtgcacattggcaaatggactttaaagtataaatctcttgtac |
23877946 |
T |
|
| Q |
208 |
taaattcctatcataatattaagatcttaaaatgttaaaaacta |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23877945 |
taaattcctatcataatattaagatcttaaaatgttaaaaacta |
23877902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 23421104 - 23421231
Alignment:
| Q |
124 |
taggagaaataggtctcaagctttttcaaaaatgttaactagtgcacattggcaaatggactttaaagtataaatctcttgtactaaattcctatcataa |
223 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
23421104 |
taggagaaacaggtctcaagctttttcaaaaatgtaaactagtacacattggcaaatgaactttaaggtataaatctcttctactaaattcctatcataa |
23421203 |
T |
|
| Q |
224 |
tattaagatcttaaaatgttaaaaacta |
251 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
23421204 |
tattaagatcttaaaatgctaaaaacta |
23421231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 23423117 - 23423173
Alignment:
| Q |
185 |
tttaaagtataaatctcttgtactaaattcctatcataatattaagatcttaaaatg |
241 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
23423117 |
tttaaagtataaatctcatttactaaattactatcataatattaaaatcttgaaatg |
23423173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 23875836 - 23875780
Alignment:
| Q |
185 |
tttaaagtataaatctcttgtactaaattcctatcataatattaagatcttaaaatg |
241 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
23875836 |
tttaaagtataaatctcatttactaaattactatcataatattaaaatcttgaaatg |
23875780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 21371867 - 21371911
Alignment:
| Q |
71 |
aattgtggtaaagttctatacatagtcaattttctggtttatcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
21371867 |
aattgtggtaaagttctatacatagtcaatattctggtttttcaa |
21371911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 11766121 - 11766077
Alignment:
| Q |
71 |
aattgtggtaaagttctatacatagtcaattttctggtttatcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
11766121 |
aattgtggtaaagttctatacatagtcaatattctggtttttcaa |
11766077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University