View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13087_high_1 (Length: 366)
Name: NF13087_high_1
Description: NF13087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13087_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 10479019 - 10479355
Alignment:
| Q |
10 |
acctttccttctattgtaaaaataaaaagtaatgcataggttaatgagcaaataaaatttttatacgtttatcgatttggcttgttaattcnnnnnnnnn |
109 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10479019 |
acctttccttctattataaaaataaaaagtaatgcataggttaatgagcaaataaaatttctatacgtttatcgatttggcttgttaattctttttttt- |
10479117 |
T |
|
| Q |
110 |
ggtagtgatttggcttgttaattctacttaacggtcataagcacatgggacgccttcttaaaaaatgagtaatgtttttgaaggnnnnnnntgagtaatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10479118 |
ggtagtgatttggcttgttaattctacttaacggtcataagcacatgggacgccttcttaaaaaatgagtaatgtttttgaaggaaaaaaatgagtaatg |
10479217 |
T |
|
| Q |
210 |
ttataccgcaaaattgtggagcatgcacttttaagaactggttttgtctgatatacacaagtaaaaatacaattttgcatcatgtaaatttattgattca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
10479218 |
ttataccgcaaaattgtggagcatgcacttttaaaaaccggttttgtctgatatacacaagtaaaaatccaatttggcatcatgtaaatttattgattca |
10479317 |
T |
|
| Q |
310 |
attgtgaaaactaacttatgcatgatgtaagtcttatc |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10479318 |
attgtgaaaactaacttatgcatgatgtaagtcttatc |
10479355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University