View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13088_high_10 (Length: 228)
Name: NF13088_high_10
Description: NF13088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13088_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 6214758 - 6214549
Alignment:
| Q |
1 |
tactactaattatgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaact |
100 |
Q |
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| T |
6214758 |
tactactaattatgttatagtatttcctgaattaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctgccaact |
6214659 |
T |
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| Q |
101 |
ataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatatcacatcaaagacattatcaatatcactttctt |
200 |
Q |
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| T |
6214658 |
ataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatatcacatcaaagacattatcaatatcactttctt |
6214559 |
T |
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| Q |
201 |
tatatgtaac |
210 |
Q |
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||| |||||| |
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| T |
6214558 |
tatgtgtaac |
6214549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 6177239 - 6177104
Alignment:
| Q |
12 |
atgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
111 |
Q |
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||||| || |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6177239 |
atgttgtactatttcctgaatcaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
6177140 |
T |
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| Q |
112 |
aatatcaagtggtataagcatttggatgtacaggta |
147 |
Q |
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| T |
6177139 |
aatatcaagtggtataagcatatggatatacaggta |
6177104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 6207025 - 6206916
Alignment:
| Q |
38 |
tgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggattaatatcaagtggtataagcatttgga |
137 |
Q |
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|||||||||||||||||||||| | || ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
6207025 |
tgtctaatgctctttttcagtggtgtgggttggacagatagtccaactagtattctaccaactataaatcagttaatatcaagtggtataagcatatgga |
6206926 |
T |
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| Q |
138 |
tgtacaggta |
147 |
Q |
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| T |
6206925 |
tatacaggta |
6206916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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