View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13088_high_3 (Length: 562)
Name: NF13088_high_3
Description: NF13088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13088_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 19 - 557
Target Start/End: Original strand, 37357545 - 37358083
Alignment:
| Q |
19 |
atcatcctcttaaaattatctttggttaacgccattgctgtatcttttgcagttccttgtttgataatggcttccctcagggcggcattactacaatttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37357545 |
atcatcctcttaaaattatctttggttaacgccattgttgtatcttttgcagttccttgtttgataatggcttccctcaggtcggcattactacaatttt |
37357644 |
T |
|
| Q |
119 |
tgtctagaaaatcaagctcttcccttaggaattattttttatcttcgagacctagtaggtgtgttgttctccaattgacttcccctatttcgacaaggat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37357645 |
tgtctagaaaatcaagctcttcccttaggaattattttttatcttcgagacttagtaggtgtgttgttctccaattgacttcccctatttcgacaaggat |
37357744 |
T |
|
| Q |
219 |
gactgattaggttccatatgtaaagcgatatggtgattctcctttggtcgaatgtggagtggatatgttcttgcagtattggatacagtttgtcggccca |
318 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37357745 |
gactgatttggttccatatgtaaagcgatatggtgattctcatttggtcgaatgtggagtggatatgttcttgcagtattggatacagtttgtcgaccca |
37357844 |
T |
|
| Q |
319 |
atttcctttggcttaatcgagtcttctctttaatcatcgaaagaaacatgatttactgcttctgcttgaccattcattttggcatgctcaattgaagtga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
37357845 |
atttcctttggcttaatcgagtcttctctttaatcatcgaaagaaacatgatttactgcttctgattgaccattcattttggcatgctccattgaagtga |
37357944 |
T |
|
| Q |
419 |
gcagctttcttactttaactcttcgaggtattctccaaatttcctatatgaaactgcgctctattgttggtaaccacgactttttggatttgaatcttgc |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37357945 |
acagctttcttactttaactcttcgaggtattctccaaatttcctatatgaaactgcgctctattgttggtaaccacgactttttggatttgaatcttgc |
37358044 |
T |
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| Q |
519 |
aaaatgtttattttgaagaaatgaagcatattcttcgac |
557 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
37358045 |
aaaatgtttattttgaagaaatgaagcatattgttcgac |
37358083 |
T |
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