View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13088_low_1 (Length: 899)
Name: NF13088_low_1
Description: NF13088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13088_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 393 - 687
Target Start/End: Complemental strand, 35502427 - 35502133
Alignment:
| Q |
393 |
tggagattaggtttacgtctatgttaacttgtctagtatggatttggattatgtgcagtttgattgcatgaagtgagcatatctgaaccgtttgatattg |
492 |
Q |
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| T |
35502427 |
tggagattaggtttacgtctatgttaacttgtctagtatggatttggattatctgcagtttgattgcatgcagtgagcatatctgaaccgtttgatattg |
35502328 |
T |
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| Q |
493 |
ataggacgatataaattttaagttgtacatttaatcatattgtaaatttttaccattgtactagtcagatcatggttaatacatacatatacaaggtata |
592 |
Q |
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| T |
35502327 |
ataggacgatctaaattttaagttgtacatttaatcatattgtaaatttttactgttgtactagtgagatcatggttaatacatacatatacaaggtata |
35502228 |
T |
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| Q |
593 |
ttgaaggaacaagaaggttgctacattgtttaaagtccaaacatatgatttaccaagatttatatatatgatgattttgcatcaatattgaatta |
687 |
Q |
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| T |
35502227 |
ttgaaggaacaaggaggttgctacattttttaaagtccaaacatatgatttaccaagatttatttatatgatgattttgcatcaatattgaatta |
35502133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 179 - 370
Target Start/End: Complemental strand, 35502671 - 35502480
Alignment:
| Q |
179 |
caaggaatttagtggctctacattggaatcctagttaaatcttgtaataaaaaatcgagagaaaaggaagacatctagagcgatcaaacgttgcagtagc |
278 |
Q |
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| T |
35502671 |
caaggaatttagtggctctacattggagtactagttaaatcttgtaataaaaaatcgagagaaaaggaagacatctagagcgatcaaacgttgcagtagc |
35502572 |
T |
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| Q |
279 |
aattcaagaggaaaggacatggaaaatatttcttagttcaattccatgcagaaaggtacgtatattttatttttcttccatattcatcgctg |
370 |
Q |
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| T |
35502571 |
aattcaagaggaaaggacatggaaaatatttcttagttcaattccatgcagaaaggtacgtatattttatttttcttccatattcatcgctg |
35502480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 707 - 882
Target Start/End: Complemental strand, 35492907 - 35492732
Alignment:
| Q |
707 |
gttattcagcacaagaataatatatttaattattttcttgcccatgtttcttatattttcaaacatacataaatttgtttaggacttgcaaatgaattac |
806 |
Q |
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| T |
35492907 |
gttattcagcacaagaataatatatttatttattttcttgcccatgtttcttatattttcaaacatacataaacttgcttaggacttgcaaatgaattac |
35492808 |
T |
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| Q |
807 |
taaatgttttaaaggctcttaatcataatattgatgatgtgagggggcaaaaagctcgaaaaaaccgtttctgact |
882 |
Q |
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| T |
35492807 |
taattgttttaaaggctcttaatcttaatattaatgatgtgagggggcaaaaagttcgaaaaaactgtttctgact |
35492732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 707 - 882
Target Start/End: Complemental strand, 35494892 - 35494716
Alignment:
| Q |
707 |
gttattcagcacaagaataatatatttaattattttcttgcccatgtttcttatattttcaaacata--cataaatttgtttaggacttgcaaatgaatt |
804 |
Q |
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| T |
35494892 |
gttattcagcacaagaataatatttttatttattttcttgcccatgtttcttatattttcaaacatatacataaacttgtttaggacttgcaaatgaatt |
35494793 |
T |
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| Q |
805 |
actaaatgttttaaaggctcttaatcataatattgatgatgtgagggggcaaaaagctcgaaaaaaccgtttctgact |
882 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
35494792 |
actaaatgttttaaaggctcttaatcttaatattgatgatgtgagggggcaaaaagct-tataaaaccgtttctgact |
35494716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 35502779 - 35502669
Alignment:
| Q |
1 |
atcaattagttttattgtgattgatttcataatcaataacaatatcaatcaccgtaattgtgattaatttcataatcaattttatattccatattcacat |
100 |
Q |
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| T |
35502779 |
atcaattagttttattgtgattgatttcataatcaataacaatatcaatcaatgtaattgtgattaatttcataatcaattttatattccatattcacat |
35502680 |
T |
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| Q |
101 |
gcaccacccaa |
111 |
Q |
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| T |
35502679 |
gcaccacccaa |
35502669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 785 - 856
Target Start/End: Complemental strand, 35500484 - 35500413
Alignment:
| Q |
785 |
ttaggacttgcaaatgaattactaaatgttttaaaggctcttaatcataatattgatgatgtgagggggcaa |
856 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
35500484 |
ttaggacttgtaaatgaattactaaatattttaaaggctcttaatcttaatgttgatgatgtgagggggcaa |
35500413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 797 - 856
Target Start/End: Original strand, 9958740 - 9958799
Alignment:
| Q |
797 |
aatgaattactaaatgttttaaaggctcttaatcataatattgatgatgtgagggggcaa |
856 |
Q |
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|||||||||||||||||||||||| ||||| ||| |||| |||||||||||||||||||| |
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| T |
9958740 |
aatgaattactaaatgttttaaagactcttgatcttaatgttgatgatgtgagggggcaa |
9958799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 797 - 856
Target Start/End: Original strand, 12381388 - 12381447
Alignment:
| Q |
797 |
aatgaattactaaatgttttaaaggctcttaatcataatattgatgatgtgagggggcaa |
856 |
Q |
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|||||||||||||||||||||||| ||||| ||| |||| |||||||||||||||||||| |
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| T |
12381388 |
aatgaattactaaatgttttaaagactcttgatcttaatgttgatgatgtgagggggcaa |
12381447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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