View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13088_low_12 (Length: 261)
Name: NF13088_low_12
Description: NF13088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13088_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 9381085 - 9380851
Alignment:
| Q |
17 |
gatacataagtggaacaagaagtgtggctgtggcatcattggaagtgatgaattcagtgataatgctacatagtagactaacagcaggaacaattgccaa |
116 |
Q |
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| T |
9381085 |
gatacaaaagtggaacaagaagtgtggctgtggcatcattggaagtgatgaattcagtgataatgctacatagtagactaacagcaggaacaattgctaa |
9380986 |
T |
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| Q |
117 |
gtatggaacatcttttaagaattctaaggcttttgacattacatcagctagaccactagattgtactccatctgctaaggcaaatccagctcctagaagc |
216 |
Q |
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| T |
9380985 |
gtatggaacatcttttaagaattctaaggcttttgacattacatcagctagaccactagattgtactccatctgctaaggcaaatccagctcctagaagc |
9380886 |
T |
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| Q |
217 |
aaaattaggttccacggtaactttttgcattcatt |
251 |
Q |
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| T |
9380885 |
aaaattaggttccatggtaactttttgcattcatt |
9380851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 55739091 - 55738864
Alignment:
| Q |
24 |
aagtggaacaagaagtgtggctgtggcatcattggaagtgatgaattcagtgataatgctacatagtagactaacagcaggaacaattgccaagtatgga |
123 |
Q |
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| T |
55739091 |
aagtggaataataagtgtagcagtggcatcattagaagtgatgaattcagtaataatactacttataagactaactgcaggagcaattgccaaatatggg |
55738992 |
T |
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| Q |
124 |
acatcttttaagaattctaaggcttttgacattacatcagctagaccactagattgtactccatctgctaaggcaaatccagctcctagaagcaaaatta |
223 |
Q |
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| T |
55738991 |
gcatcttctaagaaatctaaagctttagaaagcacatctgctagaccactagattgaactccatcagctaaagcaaaaccagctccaagtaacaaaatta |
55738892 |
T |
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| Q |
224 |
ggttccacggtaactttttgcattcatt |
251 |
Q |
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| T |
55738891 |
ggttccaaggtagtttcttgcattcatt |
55738864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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