View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13088_low_13 (Length: 233)

Name: NF13088_low_13
Description: NF13088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13088_low_13
NF13088_low_13
[»] chr8 (4 HSPs)
chr8 (1-214)||(1226393-1226608)
chr8 (1-108)||(27563043-27563146)
chr8 (10-110)||(29802693-29802791)
chr8 (4-93)||(11335386-11335473)
[»] chr4 (3 HSPs)
chr4 (8-96)||(42862256-42862342)
chr4 (19-110)||(30733897-30733986)
chr4 (42-93)||(45063985-45064036)
[»] chr5 (3 HSPs)
chr5 (8-96)||(34278736-34278822)
chr5 (3-92)||(41625297-41625384)
chr5 (1-41)||(6500200-6500240)
[»] chr1 (3 HSPs)
chr1 (8-108)||(43891401-43891499)
chr1 (1-57)||(8980724-8980778)
chr1 (8-37)||(32834859-32834888)
[»] chr2 (6 HSPs)
chr2 (1-95)||(45001843-45001935)
chr2 (1-96)||(24853260-24853353)
chr2 (9-96)||(25765641-25765726)
chr2 (1-110)||(33740561-33740668)
chr2 (16-91)||(31975507-31975580)
chr2 (1-36)||(14802930-14802965)
[»] chr6 (2 HSPs)
chr6 (8-109)||(26210745-26210844)
chr6 (9-114)||(26240748-26240851)
[»] chr3 (4 HSPs)
chr3 (9-94)||(22755513-22755596)
chr3 (8-90)||(40414939-40415019)
chr3 (8-108)||(9281423-9281521)
chr3 (44-101)||(28389270-28389327)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 1226608 - 1226393
Alignment:
Q  1 tgctatcttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatgggccag 100  Q
    |||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |    
T  1226608 tgctattttttgtttttatatattagtagaaaaataga-tctcaaaacatgttatgtgaacaatatacatttttaaattgggttatttaaaatggaccgg 1226510  T
Q  101 agggagtaattaatag--tcatttctt--nnnnnnnnnnnnnnnncttttaggccgtaatactaaatgnnnnnnnaggcctacacttagtggtttacgat 196  Q
    ||||||||||||||||  |||||||||                  |||||||||||||||||||||||       |||||||||||||||||||||||||    
T  1226509 agggagtaattaatagattcatttcttaaaaataaaaataaaaaacttttaggccgtaatactaaatg-ttttttaggcctacacttagtggtttacgat 1226411  T
Q  197 ttttgttgttgttgttaa 214  Q
    ||||||||||||||||||    
T  1226410 ttttgttgttgttgttaa 1226393  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 27563043 - 27563146
Alignment:
Q  1 tgctatcttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatgggccag 100  Q
    |||||| |||| |||||||||||||||||||||||||||||    |||||||||| |||||| |  | | |||||||||||||||||||||| ||| | |    
T  27563043 tgctatattttatctttatatattagtagaaaaatagagtc----aacatgttatatgaacagtgcatacttttaaattgggtcatttaaaacgggacgg 27563138  T
Q  101 agggagta 108  Q
    ||||||||    
T  27563139 agggagta 27563146  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 29802693 - 29802791
Alignment:
Q  10 ttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatgggccagagggagtaa 109  Q
    |||||||| ||||||||||||||||||  |||  ||||||| |||| |||| |||| ||||||| ||||| |||||| |||||||||   ||||||||||    
T  29802693 ttgtctttgtatattagtagaaaaatatggtc--aaaacatattatatgaataatacacattttcaaattaggtcatataaaatgggatggagggagtaa 29802790  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 11335386 - 11335473
Alignment:
Q  4 tatcttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaat 93  Q
    |||| ||||||||| ||||||||||||||||||  |  |||||  |||||||||||| |||| ||||||||||| | | |||||||||||    
T  11335386 tatcatttgtctttgtatattagtagaaaaatatgg--tcaaagtatgttatgtgaataatacacatttttaaaatagatcatttaaaat 11335473  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 42862256 - 42862342
Alignment:
Q  8 ttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatggg 96  Q
    |||| |||||||||||||||||||| ||||||||  |||||||||  ||||||||||| ||||||||||||| ||||||||||||||||    
T  42862256 ttttatctttatatattagtagaaatatagagtc--aaaacatgtattgtgaacaatacacatttttaaattaggtcatttaaaatggg 42862342  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 30733897 - 30733986
Alignment:
Q  19 tatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatgggccagagggagtaat 110  Q
    |||||||||||||||||||||||  ||| ||| |||| ||||||||| | |||||||||||||||| ||||||| ||| | |||||||||||    
T  30733897 tatattagtagaaaaatagagtc--aaagcatattatatgaacaatacatatttttaaattgggtcgtttaaaacgggacggagggagtaat 30733986  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 45064036 - 45063985
Alignment:
Q  42 tcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaat 93  Q
    |||||||||||||| ||| |||||||||||||||||||   |||||||||||    
T  45064036 tcaaaacatgttatatgagcaatatacatttttaaattaaatcatttaaaat 45063985  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 34278736 - 34278822
Alignment:
Q  8 ttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatggg 96  Q
    |||||||||||||||||||||||||||||  |||  |||||||||||| ||||||||| ||||||| ||||| |||||| |||||||||    
T  34278736 ttttgtctttatatattagtagaaaaataaggtc--aaaacatgttatatgaacaatacacattttaaaattaggtcatataaaatggg 34278822  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 41625297 - 41625384
Alignment:
Q  3 ctatcttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaa 92  Q
    |||| |||||||||||||||||| |||||||||||||  ||||| | |||||  ||||||||||| |||||||||||| |||||||||||    
T  41625297 ctatattttgtctttatatattaatagaaaaatagag--tcaaagcgtgttacatgaacaatatatatttttaaattgtgtcatttaaaa 41625384  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6500240 - 6500200
Alignment:
Q  1 tgctatcttttgtctttatatattagtagaaaaatagagtc 41  Q
    |||||| |||||||||||||||||| |||||||||||||||    
T  6500240 tgctatattttgtctttatatattaatagaaaaatagagtc 6500200  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 43891499 - 43891401
Alignment:
Q  8 ttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatgggccagagggagt 107  Q
    |||||||| ||||||||||||||||||||  ||   |||||||| | |||| | |||| |||||||||||||||||||| ||||||||| ||||||||||    
T  43891499 ttttgtctgtatatattagtagaaaaataaggta--aaaacatgatgtgtggataatacacatttttaaattgggtcatgtaaaatgggacagagggagt 43891402  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 8980778 - 8980724
Alignment:
Q  1 tgctatcttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgt 57  Q
    |||||| |||||||||||||||||| ||||||||||| |  |||| |||||||||||    
T  8980778 tgctatattttgtctttatatattaatagaaaaataggg--tcaatacatgttatgt 8980724  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 32834888 - 32834859
Alignment:
Q  8 ttttgtctttatatattagtagaaaaatag 37  Q
    ||||||||||||||||||||||||||||||    
T  32834888 ttttgtctttatatattagtagaaaaatag 32834859  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 45001843 - 45001935
Alignment:
Q  1 tgctatcttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatgg 95  Q
    |||||| ||||||||||||||||||| ||||||||||||  |||||| ||||||| |||| |||| ||||||| ||| | | |||||||||||||    
T  45001843 tgctatattttgtctttatatattagcagaaaaatagag--tcaaaatatgttatatgaataatacacattttaaaactagatcatttaaaatgg 45001935  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 24853353 - 24853260
Alignment:
Q  1 tgctatcttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatggg 96  Q
    |||||| |||| ||||||||||||| || |||||||  |||  ||| |||| |||||||| | || ||||||||||||||||||||||||||||||    
T  24853353 tgctatattttctctttatatattaatataaaaataatgtc--aaagcatgatatgtgaatagtacacatttttaaattgggtcatttaaaatggg 24853260  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 25765726 - 25765641
Alignment:
Q  9 tttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatggg 96  Q
    ||||||||||||||| ||||||||||||  |||  ||||||||| ||||||||||| ||| |||||||||| | | ||||||||||||    
T  25765726 tttgtctttatatatgagtagaaaaataaggtc--aaaacatgtcatgtgaacaatttacgtttttaaattagataatttaaaatggg 25765641  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 33740668 - 33740561
Alignment:
Q  1 tgctatcttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatgggccag 100  Q
    |||||| |||||||||||||||||| |||||||||||||  ||||| |||||||| |||| | || | ||||| |||||| || ||||| || ||| | |    
T  33740668 tgctatattttgtctttatatattaatagaaaaatagag--tcaaagcatgttatatgaatagtacatattttaaaattgagttatttataacgggacgg 33740571  T
Q  101 agggagtaat 110  Q
    ||||||||||    
T  33740570 agggagtaat 33740561  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 31975507 - 31975580
Alignment:
Q  16 ttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaa 91  Q
    ||||||||||||||||||||||  ||  |||  ||||||||||| ||||| ||||||||||||| |||||||||||    
T  31975507 ttatatattagtagaaaaataggatc--aaactatgttatgtgagcaatacacatttttaaattaggtcatttaaa 31975580  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14802930 - 14802965
Alignment:
Q  1 tgctatcttttgtctttatatattagtagaaaaata 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  14802930 tgctatattttgtctttatatattagtagaaaaata 14802965  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 26210844 - 26210745
Alignment:
Q  8 ttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatgggccagagggagt 107  Q
    ||||||||||||| |||||||||||||||  |||  ||| ||||||||  |||||||||  ||||||||||| |||||||||| || ||  |||||||||    
T  26210844 ttttgtctttataaattagtagaaaaataaggtc--aaatcatgttatacgaacaatatgtatttttaaattaggtcatttaatataggaaagagggagt 26210747  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 26240851 - 26240748
Alignment:
Q  9 tttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatgggccagagggagta 108  Q
    |||| |||||||||||||||||||||||  |  ||||||||| |||| |||||| |  | ||||||||| | |||||||||||||  | | ||| |||||    
T  26240851 tttggctttatatattagtagaaaaataagg--tcaaaacatattatatgaacattgaagatttttaaaataggtcatttaaaataagacggagagagta 26240754  T
Q  109 attaat 114  Q
    ||||||    
T  26240753 attaat 26240748  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 22755596 - 22755513
Alignment:
Q  9 tttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatg 94  Q
    ||||||||| ||||| ||||||||||||  |||  ||||||||||||||||| | |  ||||||| ||||| ||||||||||||||    
T  22755596 tttgtctttgtatataagtagaaaaatatggtc--aaaacatgttatgtgaatagtgcacattttgaaattaggtcatttaaaatg 22755513  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 40415019 - 40414939
Alignment:
Q  8 ttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaa 90  Q
    ||||||||||||||||||||||||||||| ||  ||||||||| |||| ||||  ||| ||||||||||||| | ||||||||    
T  40415019 ttttgtctttatatattagtagaaaaata-ag-atcaaaacatattatatgaatcataaacatttttaaattagatcatttaa 40414939  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 9281423 - 9281521
Alignment:
Q  8 ttttgtctttatatattagtagaaaaatagagtctcaaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatgggccagagggagt 107  Q
    |||||||| |||||| ||||||||||| || |||  ||| |||||   ||||| | || ||||||| ||||| |||||||||||||||| | ||||||||    
T  9281423 ttttgtctatatataatagtagaaaaacagggtc--aaagcatgtatggtgaatagtagacattttcaaattaggtcatttaaaatgggacggagggagt 9281520  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 28389270 - 28389327
Alignment:
Q  44 aaaacatgttatgtgaacaatatacatttttaaattgggtcatttaaaatgggccaga 101  Q
    |||||||||||| |||| | || ||||||||||| | |||||||||||||||| ||||    
T  28389270 aaaacatgttatatgaatagtacacatttttaaagtaggtcatttaaaatgggacaga 28389327  T

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