View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13088_low_2 (Length: 568)
Name: NF13088_low_2
Description: NF13088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13088_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 44130526 - 44130163
Alignment:
| Q |
1 |
tgaaaagtataagaaactggccaagattttcaatttcattagcattatcctttagaatatgtttgcgttgagtggtaaaagaacactcatttgatgtgat |
100 |
Q |
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| T |
44130526 |
tgaaaagtataagaaactggccaagattttcaatttcattagcgttatcctttagaatatgtttgcgttgagtggtaaaagaacactcatttgatgtgat |
44130427 |
T |
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| Q |
101 |
gaaatagggaatattagaaaatttgagttgctataagtctattctgcataacccttgcctcaacattcttgagctttttctcaatatgctctctcaagga |
200 |
Q |
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| T |
44130426 |
gaaatagggaatattagaaaatttgagttgctataagtctattctgcataacccttacctcaacattcttgagctttttctcaatatgctctctcaagga |
44130327 |
T |
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| Q |
201 |
ttgttcagatcataatcatcatatgaatttatgatctgcataacttggggttacatagaatttgggtgtctaaaactctgacattcagaagtaaaaaatt |
300 |
Q |
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| T |
44130326 |
ttgttcagatcatcatcatcatatgaatttatgatctgcataacttggggttacatagaatttgggtgtctaaaactctcacattcagaagtaaaaaatt |
44130227 |
T |
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| Q |
301 |
tgcaaagcactatattgtcggtttgttaatttttactgttaaacattgaaaccttaaattgcat |
364 |
Q |
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| T |
44130226 |
tgcaaagcactatattgtcggtttgttaatttttactgttaaacattgaaaccttaaattgcat |
44130163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 44147209 - 44147095
Alignment:
| Q |
49 |
cctttagaatatgtttgcgttgagtggtaaaagaacactcatttgatg-tgatgaa------atagggaatattagaaaatttgagttgctataagtcta |
141 |
Q |
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| T |
44147209 |
ccttttgaatacgtttgcgttgagtgataaaagaacattcatttgatgataaggaatagggaatagggaatattagaaaatttgagtggctataaatcta |
44147110 |
T |
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| Q |
142 |
ttctgcataaccctt |
156 |
Q |
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| T |
44147109 |
ttctgcataaccctt |
44147095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 230 - 316
Target Start/End: Complemental strand, 44147062 - 44146978
Alignment:
| Q |
230 |
tatgatctgcataacttggggttacatagaatttgggtgtctaaaactctgacattcagaagtaaaaaatttgcaaagcactatatt |
316 |
Q |
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| T |
44147062 |
tatgatccgcatagcttggggttacatagaatttaggtgtctaaaactc--agattctgaagtcaaaagttggcaaagcactatatt |
44146978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 486
Target Start/End: Complemental strand, 44143139 - 44143092
Alignment:
| Q |
439 |
atgctgacaagactgtactaaatgatagctaatttcactatggcttaa |
486 |
Q |
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| T |
44143139 |
atgctgacaagaatgtactaaatgatagctaattacactatggcttaa |
44143092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 535
Target Start/End: Complemental strand, 44143067 - 44143032
Alignment:
| Q |
499 |
tagcattttacgaaagaaataaaaacttagaaacaag |
535 |
Q |
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| T |
44143067 |
tagcattttacgaaa-aaataaaaacttagaaacaag |
44143032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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