View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13088_low_3 (Length: 564)
Name: NF13088_low_3
Description: NF13088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13088_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 12 - 548
Target Start/End: Complemental strand, 5998520 - 5997983
Alignment:
| Q |
12 |
aagaagcaacaggcaaaattcatttagattcattcatcatttttcattatctttcggaataattctcaactcgtaccatcccacacaaaagcttgtacaa |
111 |
Q |
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| T |
5998520 |
aagaagcaacaggcaaaattcatttagattcattcatcatttttcattatctttcggaataattctcaactcgtaccatcccacacaaaagcttgtacaa |
5998421 |
T |
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| Q |
112 |
ctttattccaatcatgacaaaatactaaaataacatctatagagtcaggtta-aaaagaggaaccaaatcaacagaaactaaactgaactacaatacact |
210 |
Q |
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| T |
5998420 |
ctttattccaatcatgacaaaataataaaataacatctatagagtcaggttataaaagaggaaccaaatcaacagaaactaaactgaactacaatacact |
5998321 |
T |
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| Q |
211 |
tttatgttggtgaccacaaggctttataaaacgtagtttcttatcctattaaatgtaggttttggactcattctaaagcaaattatcatgaaaacaaagt |
310 |
Q |
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| T |
5998320 |
tttatgttggtgaccacaaggctttataaaacgtagtttcttatcctattaaatgtaggttttggactcattctaaagcaaattatcatgaaaacaaagt |
5998221 |
T |
|
| Q |
311 |
acatcgtcaaaaccaaaatttaagacaagttgaatgggaataggatcaataaccaaaaaggtaggaatcatagttgagcaggcattgttacaaattcaca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5998220 |
acatcgtcaaaaccaaaatttaagacaagttgaatgggaataggatcaataaccaaaaaggtaggaatcatagttgagcaggcattgttacaaattcaca |
5998121 |
T |
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| Q |
411 |
aactagcacactcaaatcaaacaaagtaaagtgagattttgaagtgcatatattgataaacaacaaatgttggacgaatgagtgataaagaaagctagtg |
510 |
Q |
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| T |
5998120 |
aactagcacactcaaatcaaacaaagtaaagtgagattttgaagtgcatatattgataaacaacaaatgttggacgaatgagtgataaagaaagctagtg |
5998021 |
T |
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| Q |
511 |
agattgatgagaacttactagtatctggaacaacataa |
548 |
Q |
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| T |
5998020 |
aaattgatgagaacttactagtatctggaacaacataa |
5997983 |
T |
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