View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13088_low_5 (Length: 474)
Name: NF13088_low_5
Description: NF13088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13088_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Complemental strand, 4472016 - 4471573
Alignment:
| Q |
11 |
cacagacaaatgaaattcactttagattgattgtttctgacactttccataaatttctgatggccaacctatattatttagtattctttccaagccgtac |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
4472016 |
cacatacaaatgaaattcactttagattgattgtttctgacactttccataaatttctcatggccaacctatattatttagtactctttccaagccgtac |
4471917 |
T |
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| Q |
111 |
agcttgtaccacataaaaaatttatgaaaattataattcaaatccataagaaagcacaatccttgtgatattcagtataataaactttaatnnnnnnntt |
210 |
Q |
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| T |
4471916 |
agcttgtaccacataaaaaatttatgaaaattataattcaaatccataagaaagcacaatccttgtgatattcagtataataaactttaataaaaaattt |
4471817 |
T |
|
| Q |
211 |
atttgtccttgnnnnnnnnncaacatatcacagattcagggactttttgttgagttatgtttgtagagacacatgtagcatgatttcttttaagtataaa |
310 |
Q |
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| T |
4471816 |
atttgtccttgtttttttttcaacatatcacagattcagggactttttgttgagttatgtttgtagagacacatgtagcatgatttcttttaagtataaa |
4471717 |
T |
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| Q |
311 |
attaaattaaattacatttatggtgattttataaaacacaatattaccatattttttaaaacacaatattaccatatgacagtatgataaaatgtgattg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4471716 |
attaaattaaattacatttatggtgattttataaaacacaatatta--acattttttaaaacacaatattaccatatgacagtatgataaaatgtgattg |
4471619 |
T |
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| Q |
411 |
aatgtttgtgtcaattaaatttaaactaaactcataaagttatcat |
456 |
Q |
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| T |
4471618 |
aatgtttgtgtcaattaaatttaaactaaactcataaagttatcat |
4471573 |
T |
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