View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13088_low_6 (Length: 472)
Name: NF13088_low_6
Description: NF13088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13088_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 16113673 - 16113211
Alignment:
| Q |
1 |
ttaatcagcactatcgttgtcatatttattaaacttattttattgtggggttgactctagttttaagttattcccattccaataataatccaaaatgctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16113673 |
ttaatcagcactatcgttgtcatatttattaaacttattttattgtggggttgactctagttttaagttattcccattccaataataatccaaaatgctc |
16113574 |
T |
|
| Q |
101 |
catatggcatacgggtatcacaaatcgttttcatgataataagaacagaaaggnnnnnnnn-ttacaaaacattatttaggtaagggttcatgttgcttg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
16113573 |
catatggcatacgggtatcacaaatcgttttcatgataataagaacagaatggaaaaaaaaattacaaaacattatttaggtaagggttcatgttgcttg |
16113474 |
T |
|
| Q |
200 |
attttatttattttttgatgtagcatgtcgcttgattttaaagtcctcattatgacaacaaacattgtgagcttgtccttctttttagttctaataatgc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16113473 |
attttatttattttttgatgtagcatgtcgcttgattttaaagtcctcattatgacaacaaacattgtgagcttgtccttctttttagttctaataatgc |
16113374 |
T |
|
| Q |
300 |
actatggtttttaagttagatattatagaaataaaaaatagtagtgttaggaacattatcattttcaataggagttagaattatttgaaactcttaattt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16113373 |
actatggtttttaagttagatattatagaaataaaaaatagtagtgttaggaacattatcattttcaataggagttagaattatttgaaacttttaattt |
16113274 |
T |
|
| Q |
400 |
tagaaacaaaatatatactgaaatatagttcagtaatggactaatggtggtccttggtctgtg |
462 |
Q |
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|| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16113273 |
taaaaacaaaatatgtgctgaaatatagttcagtaatggactaatggtggtccttggtctgtg |
16113211 |
T |
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