View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13088_low_7 (Length: 459)
Name: NF13088_low_7
Description: NF13088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13088_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 5836883 - 5836452
Alignment:
| Q |
18 |
ctgtgaagcctgcgagcgtgccccggcggcttttctttgtaaagctgatgctgcttctctttgctccacttgtgatgctgatatccactctgctaaccct |
117 |
Q |
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| T |
5836883 |
ctgtgaggcctgcgagcgtgccccggcggcttttctttgtaaagctgatgctgcttctctttgctccacttgtgatgctgatatccactctgctaaccct |
5836784 |
T |
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| Q |
118 |
cttgcaagccgccaccaacgtgtcccgattcttccaatttccggttacctatacggtcctccggccacccttttaggtgccgataatgaaggcttcgtcc |
217 |
Q |
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| T |
5836783 |
cttgcaagccgccaccaacgtgtcccgattcttccaatttccggttacctatacggtcctccggccacccttttaggtgccgaagatgaaggcttcgtcc |
5836684 |
T |
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| Q |
218 |
gcggtggctgtgaggtggaggaagaggaggatgaaggtgttgatcatgatatggaagatgaaaatgaagcagcttcatggcttttgttgaatcctctaaa |
317 |
Q |
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| T |
5836683 |
gcggtggttgtgaggtggaggaagaggaggatgaaggtgttgatcatgatatggaagatgaaaatgaagcagcttcatggcttttgttgaatcctctaaa |
5836584 |
T |
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| Q |
318 |
gaacaacaataacaatagtaacaacaacattagcaatgatcataatcaagtggctaataatggatatttgtttagtggagaagttgatgagtatttggac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5836583 |
gaacaacaataacaatagtaacaacaacattagcaatgatcataatcaagtggctaataatggatatttgtttagtggagaagttgatgagtatttggac |
5836484 |
T |
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| Q |
418 |
cttgttgattgtaattcttgtggtggtgatga |
449 |
Q |
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| T |
5836483 |
cttgttgattgtaattcttgtggtggtgatga |
5836452 |
T |
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