View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13088_low_8 (Length: 368)
Name: NF13088_low_8
Description: NF13088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13088_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 352
Target Start/End: Original strand, 4774362 - 4774699
Alignment:
| Q |
15 |
acttacgaagaattatatcaattttttatttggaagaaaataatagaataatttgacatttatacaagtaaattgtttatgatggtgctcgtgaatttac |
114 |
Q |
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| T |
4774362 |
acttacgaagaattatatcaattttttatttggaagaaaataatagaataatttgacatttatacaagtaaattgtttatgatggtgctcgtgaatttac |
4774461 |
T |
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| Q |
115 |
tttgctttcctttctaaataaatagaagtggaaaaagatccagttgtnnnnnnnntttatgataataaattaatgcgtgtaagcgtgtgaaattatgtga |
214 |
Q |
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| T |
4774462 |
tttgctttcctttctaaataaatagaagtggaaaaagatccagttgtaaataaattttatgataataaattaatgcgtgtaagcgtgtgaaattatgtga |
4774561 |
T |
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| Q |
215 |
ttagtgttggcatatacgaatatgctgagaatcgtgagatcataagatgaatgagacatgtaagtcacgtaaaaaatatttcagtgcaaatatataaagt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4774562 |
ttagtgttggcatatacgaatatgctgagaatcgtgagatcataagatgaatgagacatgtaagtcacgtaaaaaatatttcagtgtaaatatataaagt |
4774661 |
T |
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| Q |
315 |
gattcctctattttatttaacatattttcatagcatgt |
352 |
Q |
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| T |
4774662 |
gattcctctattttatttaacatatttttatagcatgt |
4774699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 23169187 - 23169105
Alignment:
| Q |
270 |
acatgtaagtcacgtaaaaaatatttcagtgcaaatatataaagtgattcctctattttatttaacatattttcatagcatgt |
352 |
Q |
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||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23169187 |
acatgtaagtcacataacaaatatttcactacaaatatataaagtgattcctctattttatttaatatattttcatagcatgt |
23169105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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