View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13089_high_3 (Length: 481)
Name: NF13089_high_3
Description: NF13089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13089_high_3 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] chr5 (8 HSPs) |
| |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 15 - 481
Target Start/End: Original strand, 24860233 - 24860688
Alignment:
| Q |
15 |
tcaacacaacacaaacacacagcataactcaaatctcatttcattcaaatttcaatttcattccaatttcaatggctcgtacaaagcaaacagctcgcaa |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24860233 |
tcaacacaacacaaacacatagcataactcaaatctcatttcattcaaatttcaat-----------ttcaatggctcgtacaaagcaaacagctcgcaa |
24860321 |
T |
|
| Q |
115 |
atccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860322 |
atccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgt |
24860421 |
T |
|
| Q |
215 |
cccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctc |
314 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860422 |
cccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctc |
24860521 |
T |
|
| Q |
315 |
aagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacct |
414 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || || |
|
|
| T |
24860522 |
aagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatctcgttggactctttgaagatacaaatct |
24860621 |
T |
|
| Q |
415 |
ttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcaga |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860622 |
ttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcaga |
24860688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 83 - 469
Target Start/End: Original strand, 34748499 - 34748885
Alignment:
| Q |
83 |
tcaatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagcca |
182 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| |||| |
|
|
| T |
34748499 |
tcaatggcacgtaccaagcaaaccgctcgcaaatccactggaggtaaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggcca |
34748598 |
T |
|
| Q |
183 |
ccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaact |
282 |
Q |
| |
|
|||| |||||||||||||||||||||||| | || ||||||||||| || || || ||||| |||||||| || ||||| || || |||||||| ||||| |
|
|
| T |
34748599 |
ccggtggagtgaagaaacctcaccgtttcagaccaggaaccgtcgctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaact |
34748698 |
T |
|
| Q |
283 |
tccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagct |
382 |
Q |
| |
|
|| ||||| ||||| |||||||| |||||||| |||||||| || ||||||||||||||||| ||| || || || || |||||||| ||||| ||| |
|
|
| T |
34748699 |
ccccttccagcgtctggttcgtgagatcgctcaggatttcaagactgatctccgtttccagagctccgccgtgtcggcgctgcaagaagcggctgaggct |
34748798 |
T |
|
| Q |
383 |
tatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgct |
469 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || || |||||||| ||| | || || || ||||| |||||||| || |||||| |
|
|
| T |
34748799 |
tatctcgttggtctctttgaggatactaacctctgtgccattcatgccaagcgtgtcactatcatgcctaaggatatccagctcgct |
34748885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 365 - 456
Target Start/End: Original strand, 40036062 - 40036153
Alignment:
| Q |
365 |
caagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaagga |
456 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| ||||||||||| |||||| | || ||||| ||||| ||| ||||||| |||||||||||||| |
|
|
| T |
40036062 |
caagaggctgctgaagcatatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaagga |
40036153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 365 - 456
Target Start/End: Original strand, 40045370 - 40045461
Alignment:
| Q |
365 |
caagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaagga |
456 |
Q |
| |
|
||||| |||||||| || ||||| ||||| ||||||||||| |||||| | |||||||| ||||| ||| ||||||| |||||||||||||| |
|
|
| T |
40045370 |
caagaggctgctgaggcatatcttgttggtctctttgaggacactaacttgtgcgctatccatgccaagcgagttactattatgcccaagga |
40045461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 44771153 - 44771102
Alignment:
| Q |
283 |
tccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctc |
334 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
44771153 |
tccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctc |
44771102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 435
Target Start/End: Original strand, 53290720 - 53290832
Alignment:
| Q |
323 |
aaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgcta |
422 |
Q |
| |
|
|||||||||||| | ||||| || | || |||||| ||||||||| ||| | |||||||||||| ||||| | ||||| |||||||||||||| | | |
|
|
| T |
53290720 |
aaaacagatctcaggttccatagcaacgttgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtacca |
53290819 |
T |
|
| Q |
423 |
ttcatgctaagag |
435 |
Q |
| |
|
||||||||||||| |
|
|
| T |
53290820 |
ttcatgctaagag |
53290832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 86 - 481
Target Start/End: Original strand, 12531239 - 12531634
Alignment:
| Q |
86 |
atggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccg |
185 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || |||| |
|
|
| T |
12531239 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg |
12531338 |
T |
|
| Q |
186 |
gcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttcc |
285 |
Q |
| |
|
| ||||| ||||| || ||| | |||||||| ||||| || |||||||| || |||||||||||||| || ||||| |||||||| || | || ||||| |
|
|
| T |
12531339 |
gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttcc |
12531438 |
T |
|
| Q |
286 |
attccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttat |
385 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||||||||||||||| ||||| || || |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12531439 |
attccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
12531538 |
T |
|
| Q |
386 |
ctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcaga |
481 |
Q |
| |
|
|| ||||| | ||||| |||||||| || || || |||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12531539 |
cttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcaga |
12531634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 86 - 477
Target Start/End: Complemental strand, 12547380 - 12546989
Alignment:
| Q |
86 |
atggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccg |
185 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || |||| |
|
|
| T |
12547380 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg |
12547281 |
T |
|
| Q |
186 |
gcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttcc |
285 |
Q |
| |
|
| ||||| ||||| || ||| | |||||||| ||||| || |||||||| || |||||||||||||| || ||||| |||||||| || | || ||||| |
|
|
| T |
12547280 |
gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttcc |
12547181 |
T |
|
| Q |
286 |
attccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttat |
385 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||||||||||||||| ||||| || || |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12547180 |
attccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
12547081 |
T |
|
| Q |
386 |
ctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaat |
477 |
Q |
| |
|
|| ||||| | ||||| |||||||| || || || |||||||||||||| ||||| || ||||| |||||||||||||| ||||||||||| |
|
|
| T |
12547080 |
cttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgctcgcagaat |
12546989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 469
Target Start/End: Complemental strand, 9867024 - 9866655
Alignment:
| Q |
101 |
caaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaac |
200 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||| | ||| |||| || |||||||| || |||||||| ||||| || || || ||||||||||| | |
|
|
| T |
9867024 |
caaacggctcgcaaatccaccggcggtaaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacgggaggagtgaagaagc |
9866925 |
T |
|
| Q |
201 |
ctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaag--taccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctc |
298 |
Q |
| |
|
| |||||||||||||| |||||||| || ||||| || ||||| ||| |||||||| |||| |||||||| | | || ||||| || || | || |
|
|
| T |
9866924 |
cacaccgtttccgtcctggaaccgttgcgcttcgtgagatccgtaagagtaccaaaagagcattgagcttcttaa--ggaagcttccgtttcagagactg |
9866827 |
T |
|
| Q |
299 |
gttcgtga-aatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactc |
397 |
Q |
| |
|
| | | || ||| | |||||||| || ||||| | ||| ||||||| | |||||| |||||||||||||||||| ||| ||||| ||||| | |
|
|
| T |
9866826 |
atctgagggaaacgcgaaggatttcaagactgatctgaggttctagagtagtgatgtttctgctcttcaagaagctgctaaagactatcttgttggtttg |
9866727 |
T |
|
| Q |
398 |
tttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgct |
469 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |||| || ||||||||| |
|
|
| T |
9866726 |
tttgaagatactaacctttgtgctattcatgctaagagagttactattatgcctgaggacatccaactcgct |
9866655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 481
Target Start/End: Original strand, 9894642 - 9894784
Alignment:
| Q |
338 |
ttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagag |
437 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||| || |||||||| | | ||| | | ||||| |||||||| |||||||||||||||||||| ||| |
|
|
| T |
9894642 |
ttccagagtagtgctgtttctgctgttcaagaagttgttgaagcttgttttgttagtttgtttgaagatactaatatttgcgctattcatgctaagtgag |
9894741 |
T |
|
| Q |
438 |
ttaccattatgcccaaggatattcaactcgctcgcagaatcaga |
481 |
Q |
| |
|
|||| |||||| |||||||||| |||| ||||||||||||||| |
|
|
| T |
9894742 |
ttactattatg-gcaaggatattgaacttgctcgcagaatcaga |
9894784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 361 - 460
Target Start/End: Original strand, 9870003 - 9870102
Alignment:
| Q |
361 |
tcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatatt |
460 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| | ||| | |||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
9870003 |
tcttcaagaagctgttgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcctaaggatatt |
9870102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 447
Target Start/End: Original strand, 38735501 - 38735625
Alignment:
| Q |
323 |
aaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgcta |
422 |
Q |
| |
|
|||||||||||| | ||||| || | ||||||||| ||||||||| ||| ||||| |||||| ||||| | ||||| |||||||||||||| ||| |
|
|
| T |
38735501 |
aaaacagatctcaggttccatagcaacgctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtacta |
38735600 |
T |
|
| Q |
423 |
ttcatgctaagagagttaccattat |
447 |
Q |
| |
|
||||||||||||| ||||| ||||| |
|
|
| T |
38735601 |
ttcatgctaagagggttacaattat |
38735625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 481
Target Start/End: Original strand, 12538678 - 12538740
Alignment:
| Q |
419 |
gctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcaga |
481 |
Q |
| |
|
||||||||||||||||||||||| || ||||| || | |||||||||| |||||| ||||||| |
|
|
| T |
12538678 |
gctattcatgctaagagagttactatcatgcctaaaggtattcaactcactcgcataatcaga |
12538740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 9869866 - 9869946
Alignment:
| Q |
190 |
agtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttct |
270 |
Q |
| |
|
|||||||||||| ||| ||||| ||| |||||||| || ||||| || ||||| |||||||| || ||||| |||||||| |
|
|
| T |
9869866 |
agtgaagaaaccacactgtttctgtcatggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactgagcttct |
9869946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 85 - 465
Target Start/End: Original strand, 21317320 - 21317700
Alignment:
| Q |
85 |
aatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccacc |
184 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||||| |||||||| ||| | || || || || || |||||||| |||||||| ||||| || ||| |
|
|
| T |
21317320 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgacc |
21317419 |
T |
|
| Q |
185 |
ggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttc |
284 |
Q |
| |
|
|| ||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||| |||||||| || ||||||||| |
|
|
| T |
21317420 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
21317519 |
T |
|
| Q |
285 |
cattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagctta |
384 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||| || |||||||| |||||||||||||| ||||||||||| |
|
|
| T |
21317520 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagctta |
21317619 |
T |
|
| Q |
385 |
tctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaact |
465 |
Q |
| |
|
||| ||||| | ||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
21317620 |
tcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaact |
21317700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 84 - 465
Target Start/End: Complemental strand, 3930344 - 3929963
Alignment:
| Q |
84 |
caatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccac |
183 |
Q |
| |
|
||||||| ||||| || |||||||| || |||||||||||||||||||| ||| |||| || || || || |||||||| | ||||| || || || || |
|
|
| T |
3930344 |
caatggcacgtaccaaacaaacagcacgaaaatccaccggaggaaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaac |
3930245 |
T |
|
| Q |
184 |
cggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaactt |
283 |
Q |
| |
|
||| || || |||||||| ||| | |||||||| ||||| ||||||||||| || ||||||||||| || || ||||| || |||||||| | |||||| |
|
|
| T |
3930244 |
cggtggtgtaaagaaaccacacagattccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaactt |
3930145 |
T |
|
| Q |
284 |
ccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagctt |
383 |
Q |
| |
|
||||||||| | | ||||||||||||||||| ||||||||||| ||||| || || |||||||| |||||||| ||||||||||||||||||||||| | |
|
|
| T |
3930144 |
ccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgt |
3930045 |
T |
|
| Q |
384 |
atctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaact |
465 |
Q |
| |
|
|||| ||||| | ||||| ||||| || ||||| || |||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
3930044 |
atcttgttggtttgtttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattcaact |
3929963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 218 - 480
Target Start/End: Complemental strand, 3928858 - 3928596
Alignment:
| Q |
218 |
ggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaag |
317 |
Q |
| |
|
||||| |||||| | || |||||| | ||||| ||||| | ||| ||||||||||| | |||||||| ||| || | | |||| |||||||||||| | |
|
|
| T |
3928858 |
ggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagcttctcattaggaaacttcctttcaaaagattggttcatgaaatcgctcagg |
3928759 |
T |
|
| Q |
318 |
atttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttg |
417 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||||| |||||||||||| |||||||| | | | ||||| | ||||| |||| || ||||| |
|
|
| T |
3928758 |
atttcaaaactgatctccgattccagatcagcgctgtttctgctcttcaagaaatcgctgaagcgtgtattgttggtttgtttgaagatatgaatctttg |
3928659 |
T |
|
| Q |
418 |
cgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcag |
480 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||||| |||| || |||||||||| |
|
|
| T |
3928658 |
tgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcag |
3928596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 85 - 465
Target Start/End: Original strand, 30758 - 31137
Alignment:
| Q |
85 |
aatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccacc |
184 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||||| |||||||| ||| | || || || || || |||||||| |||||||| ||||| || ||| |
|
|
| T |
30758 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgacc |
30857 |
T |
|
| Q |
185 |
ggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttc |
284 |
Q |
| |
|
|| ||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||| |||||||| || ||||||||| |
|
|
| T |
30858 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
30957 |
T |
|
| Q |
285 |
cattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagctta |
384 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||| ||||| | |||||||| || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
30958 |
-attccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
31056 |
T |
|
| Q |
385 |
tctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaact |
465 |
Q |
| |
|
||| ||||| | ||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
31057 |
tcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaact |
31137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 85 - 465
Target Start/End: Original strand, 13576094 - 13576474
Alignment:
| Q |
85 |
aatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccacc |
184 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||||| |||||||||||| | || || || || ||||||||||| |||||||||||||| |||||| |
|
|
| T |
13576094 |
aatggcacgtaccaaacaaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaactcgccacaaaagccgctcggaaatccgctccggccacc |
13576193 |
T |
|
| Q |
185 |
ggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttc |
284 |
Q |
| |
|
|| ||||||||||| || || ||||||||||| ||||||||||| ||||| |||||||||||||| || || ||||| ||||||||||| | || |||| |
|
|
| T |
13576194 |
ggaggagtgaagaagccacatcgtttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttc |
13576293 |
T |
|
| Q |
285 |
cattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagctta |
384 |
Q |
| |
|
|||||||| | | ||||| ||||| ||||| ||||||||||| ||||||||||| || || || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
13576294 |
cattccaaagattggttcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagctta |
13576393 |
T |
|
| Q |
385 |
tctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaact |
465 |
Q |
| |
|
||| ||||| | ||||||||||| || ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
13576394 |
tcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaact |
13576474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 272 - 472
Target Start/End: Complemental strand, 34571641 - 34571441
Alignment:
| Q |
272 |
atccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaag |
371 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||| ||||| |||||||| || ||| | || |||||||| || ||| ||| ||||| |||| |
|
|
| T |
34571641 |
atccgtaaacttccattccagcgtcttgttcgtgaaattgctcaggatttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaag |
34571542 |
T |
|
| Q |
372 |
ctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcg |
471 |
Q |
| |
|
| || ||||| ||| | ||||| | ||||||||||| || | || || |||||||||||||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
34571541 |
cagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgctcg |
34571442 |
T |
|
| Q |
472 |
c |
472 |
Q |
| |
|
| |
|
|
| T |
34571441 |
c |
34571441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 82 - 331
Target Start/End: Complemental strand, 34579299 - 34579050
Alignment:
| Q |
82 |
ttcaatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagcc |
181 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||||| || || |||||||||||||| || || ||||| || || || ||||| | ||| | |
|
|
| T |
34579299 |
ttcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaaca |
34579200 |
T |
|
| Q |
182 |
accggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaac |
281 |
Q |
| |
|
||||||||| | ||||| ||||| |||| ||||| ||||| || || ||||| || || || ||||| || || | || || ||| | || || |||| |
|
|
| T |
34579199 |
accggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaac |
34579100 |
T |
|
| Q |
282 |
ttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagat |
331 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||| ||||||| |||||| |
|
|
| T |
34579099 |
ttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagat |
34579050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 82 - 331
Target Start/End: Complemental strand, 34585048 - 34584799
Alignment:
| Q |
82 |
ttcaatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagcc |
181 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||||| || || |||||||||||||| || || ||||| || || || ||||| | ||| | |
|
|
| T |
34585048 |
ttcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaaca |
34584949 |
T |
|
| Q |
182 |
accggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaac |
281 |
Q |
| |
|
||||||||| | ||||| ||||| |||| ||||| ||||| || || ||||| || || || ||||| || || | || || ||| | || || |||| |
|
|
| T |
34584948 |
accggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaac |
34584849 |
T |
|
| Q |
282 |
ttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagat |
331 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||| ||||||| |||||| |
|
|
| T |
34584848 |
ttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagat |
34584799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 34571861 - 34571801
Alignment:
| Q |
82 |
ttcaatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaag |
142 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||| || || |||||||||||| |
|
|
| T |
34571861 |
ttcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaaggaag |
34571801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 34563037 - 34562977
Alignment:
| Q |
82 |
ttcaatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaag |
142 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||| || || ||||||| |||| |
|
|
| T |
34563037 |
ttcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaag |
34562977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 398 - 465
Target Start/End: Complemental strand, 34562721 - 34562654
Alignment:
| Q |
398 |
tttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaact |
465 |
Q |
| |
|
||||||||||| || | || || |||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
34562721 |
tttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaact |
34562654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 85 - 465
Target Start/End: Complemental strand, 43480056 - 43479676
Alignment:
| Q |
85 |
aatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccacc |
184 |
Q |
| |
|
|||||||||||| || ||||| ||||||||||||||||| || ||||| |||||||| || || || || |||||||| |||||||| ||||| |||||| |
|
|
| T |
43480056 |
aatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccacc |
43479957 |
T |
|
| Q |
185 |
ggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttc |
284 |
Q |
| |
|
|| ||||||||||| || ||| | |||||||| ||||| || || ||||| || ||||||||||| || || || || |||||||||||| | || |||| |
|
|
| T |
43479956 |
ggaggagtgaagaagccacacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttc |
43479857 |
T |
|
| Q |
285 |
cattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagctta |
384 |
Q |
| |
|
|||||||| | | ||| | ||||||||||| ||||||||||| |||||| | |||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
43479856 |
cattccaaagattggttagggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagctta |
43479757 |
T |
|
| Q |
385 |
tctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaact |
465 |
Q |
| |
|
||| ||||| | ||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
43479756 |
tcttgttggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaact |
43479676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 84 - 462
Target Start/End: Original strand, 26591913 - 26592291
Alignment:
| Q |
84 |
caatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccac |
183 |
Q |
| |
|
||||||| ||||| |||||||| || ||||| |||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||| || || |
|
|
| T |
26591913 |
caatggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgac |
26592012 |
T |
|
| Q |
184 |
cggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaactt |
283 |
Q |
| |
|
||||||||||||||| || ||||||||| | || |||||||||||||| || || |||||||||||||| || ||||| || |||||||| || |||||| |
|
|
| T |
26592013 |
cggcggagtgaagaagccacaccgtttcaggccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaactt |
26592112 |
T |
|
| Q |
284 |
ccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagctt |
383 |
Q |
| |
|
|| ||||| ||||| |||||||| || ||||| |||||||| || ||||||||||| ||||| ||||| || || || |||||||| || || |||| |
|
|
| T |
26592113 |
cctttccagcgtcttgttcgtgagattgctcaggatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggctt |
26592212 |
T |
|
| Q |
384 |
atctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
462 |
Q |
| |
|
|||| |||||| | ||||||||||||||||| |||||||||||||||||| | ||||| || ||||| ||||||||||| |
|
|
| T |
26592213 |
atcttgttggattgtttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatattca |
26592291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 86 - 462
Target Start/End: Original strand, 38799242 - 38799618
Alignment:
| Q |
86 |
atggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccg |
185 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| || || || || |||||||||| || || || ||||| |||||||| ||||| || |||| |
|
|
| T |
38799242 |
atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg |
38799341 |
T |
|
| Q |
186 |
gcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttcc |
285 |
Q |
| |
|
| ||||||||||| || || | ||| | || ||||| || || | | || ||||| ||||| || || ||||| |||||||||||||| |||||||| |
|
|
| T |
38799342 |
gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttcc |
38799441 |
T |
|
| Q |
286 |
attccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttat |
385 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| |||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38799442 |
attccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttac |
38799541 |
T |
|
| Q |
386 |
ctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
462 |
Q |
| |
|
| ||||| |||||||| || || |||||||| || |||||||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
38799542 |
ttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattca |
38799618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 86 - 462
Target Start/End: Complemental strand, 38822275 - 38821899
Alignment:
| Q |
86 |
atggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccg |
185 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| || || || || |||||||||| || || || ||||| |||||||| ||||| || |||| |
|
|
| T |
38822275 |
atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg |
38822176 |
T |
|
| Q |
186 |
gcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttcc |
285 |
Q |
| |
|
| ||||||||||| || || | ||| | || ||||| || || | | || ||||| ||||| || || ||||| |||||||||||||| |||||||| |
|
|
| T |
38822175 |
gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttcc |
38822076 |
T |
|
| Q |
286 |
attccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttat |
385 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| |||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38822075 |
attccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttac |
38821976 |
T |
|
| Q |
386 |
ctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
462 |
Q |
| |
|
| ||||| |||||||| || || |||||||| || |||||||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
38821975 |
ttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattca |
38821899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 82 - 471
Target Start/End: Original strand, 25865443 - 25865832
Alignment:
| Q |
82 |
ttcaatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagcc |
181 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||| || || |||||||||||||| || || || ||||| || ||||||| |||||| || |
|
|
| T |
25865443 |
ttcaatggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaacc |
25865542 |
T |
|
| Q |
182 |
accggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaac |
281 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||| |||||||| || ||||| || ||||| ||||| || || || || |||||| | ||||| || | |
|
|
| T |
25865543 |
accggcggagtgaagaagcctcatcgttatcgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagc |
25865642 |
T |
|
| Q |
282 |
ttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagc |
381 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| | || |||||| |||||| || ||||| ||||||||||| || |
|
|
| T |
25865643 |
ttccattccagcgtcttgttcgtgaaattgctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgaggc |
25865742 |
T |
|
| Q |
382 |
ttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcg |
471 |
Q |
| |
|
|||||| || ||| | |||||||||||||| | || || |||||||||||||| || || |||||||| ||||||||||| || ||||| |
|
|
| T |
25865743 |
ttatcttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattcagcttgctcg |
25865832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 82 - 465
Target Start/End: Original strand, 41943687 - 41944070
Alignment:
| Q |
82 |
ttcaatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagcc |
181 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||| || || || ||||||||||| || || || || || || || ||||| ||||| | |
|
|
| T |
41943687 |
ttcaatggctcgtactaagcaaactgctcgcaaatccaccggtggcaaggctccaaggaagcaactggccaccaaggctgctcgcaaatctgctcctaca |
41943786 |
T |
|
| Q |
182 |
accggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaac |
281 |
Q |
| |
|
||||| ||||| ||||||||||| || | ||||| || ||||| |||||||| || ||||| || ||||| || || || || ||| | ||||| || | |
|
|
| T |
41943787 |
accggtggagtcaagaaacctcatcgctatcgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaagc |
41943886 |
T |
|
| Q |
282 |
ttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagc |
381 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||| || |||||| | |||||||| |||||| || ||||| ||||| || ||||| |
|
|
| T |
41943887 |
ttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagc |
41943986 |
T |
|
| Q |
382 |
ttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaact |
465 |
Q |
| |
|
|||||| |||||| | ||||||||||| || | || || |||||||||||||| ||||| |||||||| ||||| |||||||| |
|
|
| T |
41943987 |
ttatctggttggattgtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaact |
41944070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 362 - 462
Target Start/End: Original strand, 44343978 - 44344078
Alignment:
| Q |
362 |
cttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattc |
461 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||| | ||||||||||| || | || ||||||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
44343978 |
cttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattc |
44344077 |
T |
|
| Q |
462 |
a |
462 |
Q |
| |
|
| |
|
|
| T |
44344078 |
a |
44344078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 465
Target Start/End: Original strand, 38807046 - 38807122
Alignment:
| Q |
389 |
gttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaact |
465 |
Q |
| |
|
||||| ||||||||||| || || | ||||| |||||||||||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
38807046 |
gttggtctctttgaggacacaaatccgtgcgcaattcatgctaagagagttactatcatgcctaaggacattcaact |
38807122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 471
Target Start/End: Complemental strand, 7594236 - 7594127
Alignment:
| Q |
362 |
cttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattc |
461 |
Q |
| |
|
||||| ||||| ||||| ||||| || |||||| | |||||||| || || || || || |||||||||||||| || || |||||||| |||||||||| |
|
|
| T |
7594236 |
cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc |
7594137 |
T |
|
| Q |
462 |
aactcgctcg |
471 |
Q |
| |
|
| || ||||| |
|
|
| T |
7594136 |
agcttgctcg |
7594127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 393
Target Start/End: Complemental strand, 17769312 - 17769236
Alignment:
| Q |
317 |
gatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttgg |
393 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||||||| |||||||||||||| || ||||||||| ||||| |
|
|
| T |
17769312 |
gatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagccagtgtagcttatcttgttgg |
17769236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 7594487 - 7594402
Alignment:
| Q |
239 |
atccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa |
324 |
Q |
| |
|
||||| |||||||| || || || |||||| | ||||| || |||||||| || ||||| || |||||||| |||||||||||||| |
|
|
| T |
7594487 |
atccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaa |
7594402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 7594977 - 7594916
Alignment:
| Q |
86 |
atggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagct |
147 |
Q |
| |
|
||||||||||| |||||||| |||||||| || ||||| || || || |||||||||||||| |
|
|
| T |
7594977 |
atggctcgtaccaagcaaaccgctcgcaagtctaccggtggtaaggctccaaggaagcagct |
7594916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 18492741 - 18492793
Alignment:
| Q |
272 |
atccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa |
324 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
18492741 |
atccgtaaacttccattccagtgtcttgttcgtgaaatttctcaagatttcaa |
18492793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 393
Target Start/End: Original strand, 27440875 - 27440951
Alignment:
| Q |
317 |
gatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttgg |
393 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||| |||||||||||||| || ||||||||| ||||| |
|
|
| T |
27440875 |
gatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagccagtgtagcttatcttgttgg |
27440951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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