View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13089_low_1 (Length: 620)
Name: NF13089_low_1
Description: NF13089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13089_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 557; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 3 - 603
Target Start/End: Complemental strand, 3723418 - 3722818
Alignment:
| Q |
3 |
catgtcgaagaatatttggaactatcagctaagacgaaaacctatttttcaactgttgttgccttgtgggatgcagaattttatgtcaaagttgatgatg |
102 |
Q |
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| T |
3723418 |
catgtcgaaggatatttggaactatcagctaagacgaaaacctatttttcaactgttcttgccttgtgggatgcagaattttatgtcaaagttgatgatg |
3723319 |
T |
|
| Q |
103 |
atgttcatgtgaatttaggtacattgaaaaattcttctgtgttgacagtttgttttgtttgataaaatacttacttgctccttatatgtatgtaggaaaa |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
3723318 |
atgttcatgtgaatttaggtacattgaaaaattcttctgcgtttacagtttgttttgtttgataaaattcttacttgctccttatatgtatgcaggaaaa |
3723219 |
T |
|
| Q |
203 |
ttactttgcattgttttataaaagaacaaatgaattagttaaatttattacaacttttaagtgaaaaatacaccttcttacttgtatgattgaatgattg |
302 |
Q |
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| T |
3723218 |
ttactttacattgttttataaaagaacaaatgaattagttaaatttattacaactgttaagtaaaaaatacaccttcttacttgtatgattgaatgattg |
3723119 |
T |
|
| Q |
303 |
aagcttctaattctaaaaatgaaagggaaccatttgcttacttacttgtatggtcattattagtgtgaatggatagaagaatgaaaaggcataaaatcca |
402 |
Q |
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| T |
3723118 |
aagcttctaattctaaaaatgaaagggaaccatttgcttacttacttgtatggtcattattagtgtgaatggatagaagaatgaaaaggcataaaatcca |
3723019 |
T |
|
| Q |
403 |
ttaaatttttatttggtataagtttattcgaccaccttctttagaaaattcataatagatgtcactattcaaccagtgaaagtttgtgtagattatgtgg |
502 |
Q |
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| T |
3723018 |
ttaaatttttatttggtataagtttattcgaccaccttctttagaaaattcataatagatatcactattcaaccagtgaaagtttgtgtagattatgtgg |
3722919 |
T |
|
| Q |
503 |
catgggtttatcacaaagcaaccaaaattgttgatcaatatgaacattcatcactaacaccctatgttgtttattttttaaatctcagcaacacttggat |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3722918 |
catgggtttatcacaaagcaaccaaaattgttgatcaatatgaacattcatcactaacacactatgttgtttattttttaaatctcagcaacacttggat |
3722819 |
T |
|
| Q |
603 |
c |
603 |
Q |
| |
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| T |
3722818 |
c |
3722818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 17124754 - 17124808
Alignment:
| Q |
69 |
tgggatgcagaattttatgtcaaagttgatgatgatgttcatgtgaatttaggta |
123 |
Q |
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| T |
17124754 |
tgggatgctgatttttatgtcaaagttgatgacgatgttcatgtaaatataggta |
17124808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 37186483 - 37186385
Alignment:
| Q |
25 |
tatcagctaagacgaaaacctatttttcaactgttgttgccttgtgggatgcagaattttatgtcaaagttgatgatgatgttcatgtgaatttaggta |
123 |
Q |
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||||||| ||||| || ||||||||| | |||| |||| |||||||||||| || || ||| ||||||||||||||||||||||||| ||| |||||| |
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| T |
37186483 |
tatcagcaaagacaaagacctattttgccactgctgttaacttgtgggatgctgacttctatatcaaagttgatgatgatgttcatgtaaatataggta |
37186385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 33084541 - 33084487
Alignment:
| Q |
69 |
tgggatgcagaattttatgtcaaagttgatgatgatgttcatgtgaatttaggta |
123 |
Q |
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|||||||| || || ||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
33084541 |
tgggatgctgatttctatgtcaaagtagatgacgatgttcatgtcaatttaggta |
33084487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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