View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13089_low_2 (Length: 565)
Name: NF13089_low_2
Description: NF13089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13089_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 24861228 - 24860928
Alignment:
| Q |
17 |
caacacacacaaatctaaacacaaatactcatttacaaaaatcacttaaataaataacttttaaactaattatacctatgaagaagcttaaccctttctt |
116 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24861228 |
caacacacacaaatctaaacactaatactcaattacaaaaatcacttaaataaataacttttaaactaattttacctatgaagaagcttaaccctttctt |
24861129 |
T |
|
| Q |
117 |
tcaaatgctttttaggaaccaaatatttatccattttcgcgcgttctctgcaaataatcgcttcaacccctcaaaaccaaaaattattttcaaccaaaca |
216 |
Q |
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| T |
24861128 |
tcaaatgctttttaggaaccaaatatttatccattttcgcgctttctctgaaaataatcgcttaaacccctcaaaaccaaaaataattttcaaccaaaca |
24861029 |
T |
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| Q |
217 |
a--nnnnnnnnnnnntcaacagcgtccnnnnnnnttcccgccaattaaatgggccccaataaag--ttgtgggccacacttaagcccagcccaatatcac |
312 |
Q |
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| T |
24861028 |
actctctctctctcttcaacagcgtccaaaaaaattcccgccaattaaatgggccccaataaagttttgtgggccacacttaagcccagcccaatatcac |
24860929 |
T |
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| Q |
313 |
c |
313 |
Q |
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| T |
24860928 |
c |
24860928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 405 - 562
Target Start/End: Complemental strand, 24860836 - 24860678
Alignment:
| Q |
405 |
gaaaccagtaatttcatttcatttcattccgataataataaacattacatcaccgata--cgattacattagaaaacgaaacgctaaatcttcaaaattt |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
24860836 |
gaaaccagtaatttcatttcatttcattccgataataataa-cattacatcaccgatatacgattacattagaaaacgaaacgctaaatcttcgaaattt |
24860738 |
T |
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| Q |
503 |
caagtaaattacattaataaccctaagcctgtgcttaagccctctcgcctatgattctgc |
562 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
24860737 |
caagtaaattacattaataaccctaagcctatgcttaagccctctcgcctctgattctgc |
24860678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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