View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_high_18 (Length: 499)
Name: NF1308_high_18
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 27296705 - 27296210
Alignment:
| Q |
1 |
cgtgtcatgtcaatattagacactgacacatgtcgggcaccatacacgcctatttttccgtagaaattttgttgttcacattaagctaatcattta-acc |
99 |
Q |
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| T |
27296705 |
cgtgtcatgtcaatattagacagtgacacatgtcgggcaccatacacgcctatttttccatagaaattttgttgttcacattaagctaatcatttatacc |
27296606 |
T |
|
| Q |
100 |
tttgcgattgtactagattgaaagttcactgggaggaaaaatgccaagcatcaaaccaactgtgagtaacattttaaacctttttcaacaccaaatttga |
199 |
Q |
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| T |
27296605 |
tttgcgattgtactagattgaaagttcactgggaggaaaaatgccaagcatcaaaccaactgtgagtaacattttaaacctttttcaacaccaaatttga |
27296506 |
T |
|
| Q |
200 |
tttatgttaaggagatttaggaacataatgaagctaatacatgtttctgtaacaggcaataaggttctatggaagtattaatccaacagtcacaggcata |
299 |
Q |
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| T |
27296505 |
tttatgttaaggagatttaggaacataatgaagctaatacatgtttctgta-caggctataaggttctatggaagtattaatccaacagtcacaggcata |
27296407 |
T |
|
| Q |
300 |
acaattcaaaatagtccacaatgccatctcaagtttgacaactgtaatggagtcttggtccatgatgtgaccatatcatctcctggtgatagtcctaaca |
399 |
Q |
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| T |
27296406 |
acaattcaaaatagtccacaatgccatctcaagtttgacaactgtaatggagtcttggtccatgatgtgaccatatcatctcctggtgatagtcctaaca |
27296307 |
T |
|
| Q |
400 |
ctgatggaattcacttacagaactcaagagatgtattgatatacaaaagtactatggcttgcggtaatatttcaattacggatatattattggacat |
496 |
Q |
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| T |
27296306 |
ctgatggaattcacttacagaactcaagagatgtattgatatacaaaagtactatggcttgcggtaatatttcaattacggataaattattgcacat |
27296210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 439
Target Start/End: Original strand, 14737638 - 14737796
Alignment:
| Q |
281 |
tccaacagtcacaggcataacaattcaaaatagtccacaatgccatctcaagtttgacaactgtaatggagtcttggtccatgatgtgaccatatcatct |
380 |
Q |
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|||||| ||||| || ||||||||||| |||||||| || || ||||| ||||||||||| || ||||| ||| | || |||||||||| || |||||| |
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| T |
14737638 |
tccaactgtcacgggtataacaattcagaatagtcctcagtgtcatctaaagtttgacaattgcaatggggtccttgttcatgatgtgagtatttcatct |
14737737 |
T |
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| Q |
381 |
cctggtgatagtcctaacactgatggaattcacttacagaactcaagagatgtattgat |
439 |
Q |
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| T |
14737738 |
cctggtgatagccctaataccgatggaattcaccttcagaattccaaagatgtgttgat |
14737796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Original strand, 865581 - 865624
Alignment:
| Q |
375 |
tcatctcctggtgatagtcctaacactgatggaattcacttaca |
418 |
Q |
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| T |
865581 |
tcatcacctggtgatagtcctaacacagatggaattcacctaca |
865624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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