View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1308_high_20 (Length: 495)
Name: NF1308_high_20
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 112 - 488
Target Start/End: Complemental strand, 41735301 - 41734922
Alignment:
| Q |
112 |
ccttagccgactccttgaaattgaataccaatgtgacgatctataccgaaagtgtacactaaacaatgtaacaacaatagttcaatatatttaaatgacc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41735301 |
ccttagccgactccttgaaattgaataccaatgtgacgatctataccgaaagtgtacactaaacaatgtaacaacaatagttcaatatatttaaatgacc |
41735202 |
T |
|
| Q |
212 |
gatttacaatggttctcgacatcaatttaattgcgaaaatgtcttttatcttgtaattcccatttttcactagtgatgggcgatagtcatatattcttca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41735201 |
gatttacaatggttctcgacatcaatttaattgcgaaaatgtcttttatcttgtaattcccattttgcactagtgatgggcgatagtcatatattcttca |
41735102 |
T |
|
| Q |
312 |
caccaattcaatatatagttggccta---atcagattggtaatctaccatatgccaaccttggtagagtatttatacacttttaccatccatcttgacat |
408 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41735101 |
caccaattcaatatatagttggcctaatgatcagattggtaatctaccatatgccaaccttggtagagtatttatacacttttaccatccatcttgacat |
41735002 |
T |
|
| Q |
409 |
caccaattcaatctgccactgatcataatatgatgaagcaaaatctattagtgaaaataatcactcttctccctttgctt |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41735001 |
caccaattcaatctgccactgatcataatatgatgaagcaaaatctattagtgaaaataatcactcttctcccttggctt |
41734922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University