View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1308_high_27 (Length: 432)

Name: NF1308_high_27
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1308_high_27
NF1308_high_27
[»] chr6 (23 HSPs)
chr6 (181-404)||(33263454-33263677)
chr6 (216-404)||(33401437-33401625)
chr6 (181-404)||(33286362-33286591)
chr6 (232-404)||(33305300-33305472)
chr6 (212-404)||(33388858-33389050)
chr6 (307-404)||(31561982-31562079)
chr6 (24-88)||(33263790-33263854)
chr6 (181-404)||(33359532-33359752)
chr6 (230-400)||(33643701-33643871)
chr6 (182-404)||(33272616-33272841)
chr6 (228-404)||(9167583-9167753)
chr6 (215-404)||(33058380-33058572)
chr6 (24-82)||(33401761-33401819)
chr6 (228-274)||(33410916-33410962)
chr6 (238-275)||(31561898-31561935)
chr6 (24-85)||(33286686-33286747)
chr6 (24-87)||(9167913-9167976)
chr6 (305-404)||(33410756-33410855)
chr6 (24-85)||(33058707-33058768)
chr6 (25-83)||(33389215-33389273)
chr6 (25-83)||(33643481-33643539)
chr6 (45-86)||(33411095-33411136)
chr6 (25-85)||(31561685-31561745)
[»] chr2 (1 HSPs)
chr2 (181-402)||(17439864-17440091)
[»] chr4 (8 HSPs)
chr4 (307-404)||(31503299-31503396)
chr4 (233-404)||(31478075-31478246)
chr4 (321-390)||(31033070-31033139)
chr4 (305-378)||(31498063-31498136)
chr4 (326-404)||(31149176-31149254)
chr4 (321-404)||(31527235-31527318)
chr4 (346-403)||(31158051-31158108)
chr4 (47-87)||(31497818-31497858)
[»] scaffold1408 (2 HSPs)
scaffold1408 (309-402)||(1447-1540)
scaffold1408 (238-277)||(1596-1635)
[»] scaffold0428 (3 HSPs)
scaffold0428 (309-402)||(7193-7286)
scaffold0428 (238-277)||(7342-7381)
scaffold0428 (25-82)||(7907-7964)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 181 - 404
Target Start/End: Complemental strand, 33263677 - 33263454
Alignment:
Q  181 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtac 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33263677 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtggacgttgaacaattgtcaaaaatgagtaatcttagattgctcatcatcaggtac 33263578  T
Q  281 ggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcacc 380  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33263577 ggaatgtatatctcaggaagcccaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcacc 33263478  T
Q  381 ccaatgaacttgtagaattgatct 404  Q
    ||||||||||||||||||||||||    
T  33263477 ccaatgaacttgtagaattgatct 33263454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 216 - 404
Target Start/End: Complemental strand, 33401625 - 33401437
Alignment:
Q  216 atgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttc 315  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| | |||||||||| || |     | ||||||||||| |||||| || ||||||    
T  33401625 atgaagaggtggatgttgaacacttatcaaaaatgagtaatcttagacttctcatcatcaagtgcaattggaatatctcaggaggctcaaattttctttc 33401526  T
Q  316 aaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 404  Q
    |||| |||| ||||||||||| ||| ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33401525 aaacgaattaagatatgttgattggcatgaatatcctttcaagtatttgccaacaagttttcaccccaatgaacttgtagaattgatct 33401437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 181 - 404
Target Start/End: Complemental strand, 33286591 - 33286362
Alignment:
Q  181 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtgg------acgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 274  Q
    |||||||||||| ||||||||| |||||||| ||||||||||||| |      | |||||||||||||||||||||||||||||||||||||||||||||    
T  33286591 ttaggaaaagcatgttaaagccttagttttgaatgatgaagaggttggattgaatgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 33286492  T
Q  275 aggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagtt 374  Q
    | ||  ||  || ||||||| ||||||  |    |||||||||||||||| ||||||||| |||||  || ||||||||  || ||||||||||||| ||    
T  33286491 atgtggggtgtgaatatctccggaagcctattgagtctttcaaacaaattaagatatgttcagtggactggatatcctttcaaatatttgccatcaaatt 33286392  T
Q  375 ttcaccccaatgaacttgtagaattgatct 404  Q
    ||||||||||||||||||||||||||||||    
T  33286391 ttcaccccaatgaacttgtagaattgatct 33286362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 232 - 404
Target Start/End: Complemental strand, 33305472 - 33305300
Alignment:
Q  232 tgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatat 331  Q
    ||||||| |||||||||||| |||||||||||| |||||| ||| ||||||   ||  |||||||||||  || |  || ||||||||||||| | ||||    
T  33305472 tgaacacgtgtcaaaaatgaataatcttagattcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaattaaaatat 33305373  T
Q  332 gttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 404  Q
    ||||| ||| ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33305372 gttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatct 33305300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 212 - 404
Target Start/End: Complemental strand, 33389050 - 33388858
Alignment:
Q  212 gatgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtc 311  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||  ||   | ||||| || | ||| ||    |||    
T  33389050 gatgttgaagaggtggacgttgaacagttgtcaaaaatgagtaatcttagattactcatcatcaagtggggtccgaatatcccaagtagcccatcgagtc 33388951  T
Q  312 tttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 404  Q
    ||||||||| ||| ||||||||||||||| || | |||||||  |||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  33388950 tttcaaacacattaagatatgttgagtggaattattatcctttcaagtatttgccatcaagttttcaccccagtgatcttgtagagttgatct 33388858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 307 - 404
Target Start/End: Original strand, 31561982 - 31562079
Alignment:
Q  307 ttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 404  Q
    ||||||||| |||||||| |||||||||||||||  |||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31561982 ttgtctttcgaacaaattaagatatgttgagtggcttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatct 31562079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 33263854 - 33263790
Alignment:
Q  24 atggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagc 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33263854 atggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagc 33263790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 404
Target Start/End: Complemental strand, 33359752 - 33359532
Alignment:
Q  181 ttaggaaaagcaagttaaagccatagttttggatgatgaaga---ggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcagg 277  Q
    ||||||||| || ||| ||||||||||||||  | ||||| |   ||||||| |||||||||||||||||||||||||||||||| ||||||||||||      
T  33359752 ttaggaaaaacatgttgaagccatagttttgattcatgaaaagatggtggactttgaacacttgtcaaaaatgagtaatcttagagtgctcatcatca-- 33359655  T
Q  278 tacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttc 377  Q
     | | |   ||||||||| ||||| |||   |||||||||||  ||| |||| | || ||||||| | ||||||||   ||||||||||| ||||||||     
T  33359654 -atgca---tatatctcaagaagcccaacgagtctttcaaacgcattaagatttattcagtgggaggcatatccttgccagtatttgccaacaagtttta 33359559  T
Q  378 accccaatgaacttgtagaattgatct 404  Q
    || ||||||||||||||||||||||||    
T  33359558 actccaatgaacttgtagaattgatct 33359532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 230 - 400
Target Start/End: Original strand, 33643701 - 33643871
Alignment:
Q  230 gttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagat 329  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| | || |||   | |||||| || |||| ||||||||||||||||  |||| ||||    
T  33643701 gttgaatacttgtcaaaaatgagtaatcttagattgctgatcataaagtgcggttggcatatcttagaaagcccaagttgtctttcaaaggaattaagat 33643800  T
Q  330 atgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattg 400  Q
    ||||||| ||| ||   |||||||  | || ||||||||||| |||||| |||||| ||||||||||||||    
T  33643801 atgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattg 33643871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 182 - 404
Target Start/End: Complemental strand, 33272841 - 33272616
Alignment:
Q  182 taggaaaagcaagttaaagccatagt--tttgga-tgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggt 278  Q
    ||||||||||| ||| |||||||||   |||||| | ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |||| ||    
T  33272841 taggaaaagcatgttgaagccatagaactttggagttatgaagaagtggtcgttgaacacttggcaaaaatgagtaatcttagattgctcataatcaagt 33272742  T
Q  279 acggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttca 378  Q
     |||   | ||||| |||| ||   |    | ||||||||   ||| ||||||||||||||||||| ||||||||  |||| | | ||| ||||||||||    
T  33272741 gcggtcggaatatcccaggtagtctatcgagcctttcaaatgcattaagatatgttgagtgggatggatatcctttcaagtgtctaccaacaagttttca 33272642  T
Q  379 ccccaatgaacttgtagaattgatct 404  Q
    ||||||||| ||| ||||||||||||    
T  33272641 ccccaatgaccttatagaattgatct 33272616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 228 - 404
Target Start/End: Complemental strand, 9167753 - 9167583
Alignment:
Q  228 acgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgag 327  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  |||||   | |||||| |       || || ||||||| ||| |||| ||    
T  9167753 acgttgaacacttgtcaaaaatgagtagtcttagattgctcatcatcaaatacggttggaatatcttac------catgtagtctttcgaacgaattaag 9167660  T
Q  328 atatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 404  Q
    |||| |||||||| ||  ||||||||  |||||||||||||| ||||||||| |||||||||||||| || ||||||    
T  9167659 atatcttgagtggtatcgatatcctttcaagtatttgccatcgagttttcacgccaatgaacttgtacaactgatct 9167583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 404
Target Start/End: Complemental strand, 33058572 - 33058380
Alignment:
Q  215 gatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtata---tctcaggaagctcaagttgtc 311  Q
    |||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||    ||   || |  |   | | ||||  | |||| ||||    
T  33058572 gatgaagaggcggactttgaacacttgtcaaaaatgagtaatctcagattgctcttcatcgccaactatatttcaacgatgttaggattcccaagctgtc 33058473  T
Q  312 tttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 404  Q
    |||| |||||||| |||| |||| | |||  |  ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33058472 tttcgaacaaattaagatttgttcactggtttagatatccttccaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatct 33058380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 33401819 - 33401761
Alignment:
Q  24 atggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaa 82  Q
    |||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  33401819 atggagcaggttgtggtctgcaaaacaactctacgatgttaagatggagaatatggtaa 33401761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 33410962 - 33410916
Alignment:
Q  228 acgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 274  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  33410962 acgttgaacacttttcaaaaatgagtaatcttagattgctcatcatc 33410916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 31561898 - 31561935
Alignment:
Q  238 cttgtcaaaaatgagtaatcttagattgctcatcatca 275  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31561898 cttgtcaaaaatgagtaatcttagattgctcatcatca 31561935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 33286747 - 33286686
Alignment:
Q  24 atggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 85  Q
    |||||| |||||||||||| || ||||| |||||||||||| | ||||||||||||||||||    
T  33286747 atggagcaggttgtggtccacagaacaactctacaatgttatgttggagaatatggtaaagt 33286686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 9167976 - 9167913
Alignment:
Q  24 atggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtag 87  Q
    |||||| ||||||||||||  ||||||| |||||||||||  |||||||| |||||||||||||    
T  9167976 atggagcaggttgtggtccaaaaaacaactctacaatgttgcgatggagagtatggtaaagtag 9167913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 404
Target Start/End: Complemental strand, 33410855 - 33410756
Alignment:
Q  305 agttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 404  Q
    |||||||||||||||||||| || ||| |||| |||||  | |||||||    | | ||||||| |||||||||||| ||||||||||| ||||||||||    
T  33410855 agttgtctttcaaacaaattaaggtattttgactgggagcattatcctttctgggaattgccattaagttttcaccctaatgaacttgttgaattgatct 33410756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 33058768 - 33058707
Alignment:
Q  24 atggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 85  Q
    |||||| |||||||||||| || ||||| ||||| |||||| | ||||||||||||||||||    
T  33058768 atggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagt 33058707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 33389273 - 33389215
Alignment:
Q  25 tggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaa 83  Q
    ||||| ||| ||||||||  ||||||| |||||||||||| ||||||||| ||||||||    
T  33389273 tggagcagggtgtggtcccaaaaacaactctacaatgttacgatggagaaaatggtaaa 33389215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 33643481 - 33643539
Alignment:
Q  25 tggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaa 83  Q
    ||||| ||| ||||||||  ||||||| |||||||||||  ||||||||||||||||||    
T  33643481 tggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 33643539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 33411136 - 33411095
Alignment:
Q  45 aaaacaattctacaatgttaagatggagaatatggtaaagta 86  Q
    ||||||| ||||||| |||| |||||||||||||||||||||    
T  33411136 aaaacaactctacaacgttatgatggagaatatggtaaagta 33411095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 31561685 - 31561745
Alignment:
Q  25 tggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 85  Q
    ||||| ||||||||||||    ||||| |||||||||||| ||||||||| ||||||||||    
T  31561685 tggagcaggttgtggtcccatgaacaaatctacaatgttatgatggagaaaatggtaaagt 31561745  T

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Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 181 - 402
Target Start/End: Original strand, 17439864 - 17440091
Alignment:
Q  181 ttaggaaaagcaagttaaagccatagttttggatgat---gaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcagg 277  Q
    |||||||||||| ||| |||||||||||||| |  ||   ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||       
T  17439864 ttaggaaaagcatgttgaagccatagttttgaaatatactgaagaggtggacgctgaacatttgtcaaaaatgagtaatcttagattgctcatcatcgtc 17439963  T
Q  278 tacggaa-tgta--tatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagtt 374  Q
     ||   | || |  ||||||||||  | ||||||||||||| |||||||| |||||||||||||||  | |||||||||  |||||||||||| ||||||    
T  17439964 aaccatactgcaactatctcaggattcccaagttgtctttcgaacaaattaagatatgttgagtggcctaaatatcctttcaagtatttgccaacaagtt 17440063  T
Q  375 ttcaccccaatgaacttgtagaattgat 402  Q
    |||||||||||||||| |||||||||||    
T  17440064 ttcaccccaatgaactagtagaattgat 17440091  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 404
Target Start/End: Original strand, 31503299 - 31503396
Alignment:
Q  307 ttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 404  Q
    ||||||||| ||| |||| ||||||||||| |||  |||||||||||  ||||||||||| ||||||||||| || ||| ||||||| || |||||||    
T  31503299 ttgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccgtcaagttttcagccaaatcaacttgttgagttgatct 31503396  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 404
Target Start/End: Original strand, 31478075 - 31478246
Alignment:
Q  233 gaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatg 332  Q
    ||||||||||| ||||||||  ||||||||||||||||| ||||||      || | | |||||||| |   |||||| |||| ||  || | |||||||    
T  31478075 gaacacttgtctaaaatgagacatcttagattgctcatcgtcaggtgtcctgtgaacacctcaggaaaccttagttgtttttctaaagaactaagatatg 31478174  T
Q  333 ttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 404  Q
    ||||||||  |||||||||||  |||||||||||||| |||||| || | ||| ||||||| ||||||||||    
T  31478175 ttgagtggagtgaatatcctttcaagtatttgccatcgagttttgactctaatcaacttgttgaattgatct 31478246  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 31033139 - 31033070
Alignment:
Q  321 aattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaact 390  Q
    ||||||||||||||||||||  |||||||||||  | |||||||||  ||||||||||||||||| ||||    
T  31033139 aattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcaccccaatcaact 31033070  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 31498063 - 31498136
Alignment:
Q  305 agttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttca 378  Q
    ||||||||||| |||||||| |||||| |||||||| ||||||||||||  | |||||| ||||||| ||||||    
T  31498063 agttgtctttccaacaaattaagatattttgagtggcatgaatatcctttcatgtatttaccatcaaattttca 31498136  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 404
Target Start/End: Complemental strand, 31149254 - 31149176
Alignment:
Q  326 agatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 404  Q
    |||||||| |||||| ||  ||||||||  ||||||||||||||||||||||  || ||| ||||||| ||||||||||    
T  31149254 agatatgtcgagtggaatagatatcctttcaagtatttgccatcaagttttctgcctaatcaacttgtcgaattgatct 31149176  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 31527318 - 31527235
Alignment:
Q  321 aattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 404  Q
    |||| |||||||||||||||   ||||||||||  | ||||||||||||||||||||| ||| |  ||||||| || |||||||    
T  31527318 aattaagatatgttgagtggcgggaatatcctttcatgtatttgccatcaagttttcaaccctaccaacttgttgagttgatct 31527235  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 31158108 - 31158051
Alignment:
Q  346 atatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatc 403  Q
    ||||||||  |||||||||||| || ||||||| |||||| ||||||| |||||||||    
T  31158108 atatcctttcaagtatttgccagcatgttttcagcccaatcaacttgttgaattgatc 31158051  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 31497818 - 31497858
Alignment:
Q  47 aacaattctacaatgttaagatggagaatatggtaaagtag 87  Q
    ||||||||||| |||||| | ||||||||||||||||||||    
T  31497818 aacaattctacgatgttatgttggagaatatggtaaagtag 31497858  T

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Target: scaffold1408 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 402
Target Start/End: Complemental strand, 1540 - 1447
Alignment:
Q  309 gtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgat 402  Q
    |||| |||||||||||  |||||||| | |||  || ||||||||  |||||| |||||||||||||||||||   ||||||||||||||||||    
T  1540 gtctatcaaacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgat 1447  T

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Target: scaffold1408; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 1635 - 1596
Alignment:
Q  238 cttgtcaaaaatgagtaatcttagattgctcatcatcagg 277  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  1635 cttgtcaacaatgagtaatcttagattgctaatcatcagg 1596  T

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Target: scaffold0428 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 402
Target Start/End: Complemental strand, 7286 - 7193
Alignment:
Q  309 gtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgat 402  Q
    |||| |||||||||||  |||||||| | |||  || ||||||||  |||||| |||||||||||||||||||   ||||||||||||||||||    
T  7286 gtctatcaaacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgat 7193  T

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Target: scaffold0428; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 7381 - 7342
Alignment:
Q  238 cttgtcaaaaatgagtaatcttagattgctcatcatcagg 277  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  7381 cttgtcaacaatgagtaatcttagattgctaatcatcagg 7342  T

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Target: scaffold0428; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 7964 - 7907
Alignment:
Q  25 tggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaa 82  Q
    ||||| ||| ||||||||  | ||||| |||||||||||| |||||||||||||||||    
T  7964 tggagcaggatgtggtccaaacaacaactctacaatgttacgatggagaatatggtaa 7907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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