View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1308_high_3 (Length: 932)

Name: NF1308_high_3
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1308_high_3
NF1308_high_3
[»] chr6 (10 HSPs)
chr6 (29-904)||(17277367-17278242)
chr6 (196-413)||(17265993-17266206)
chr6 (85-177)||(32933979-32934070)
chr6 (62-177)||(3880244-3880359)
chr6 (58-176)||(9224263-9224380)
chr6 (84-178)||(13423718-13423812)
chr6 (69-182)||(20701425-20701537)
chr6 (112-178)||(16180488-16180553)
chr6 (57-99)||(20500282-20500323)
chr6 (139-184)||(4043342-4043387)
[»] chr3 (15 HSPs)
chr3 (58-177)||(32010117-32010236)
chr3 (45-178)||(823028-823161)
chr3 (62-175)||(25594142-25594255)
chr3 (56-177)||(46358014-46358135)
chr3 (29-177)||(45354540-45354688)
chr3 (62-177)||(50518721-50518836)
chr3 (65-185)||(27399325-27399446)
chr3 (62-177)||(4171078-4171193)
chr3 (29-148)||(40689392-40689512)
chr3 (62-177)||(14893264-14893379)
chr3 (76-177)||(33143584-33143685)
chr3 (62-178)||(25648017-25648133)
chr3 (68-152)||(37123710-37123794)
chr3 (69-176)||(48892986-48893093)
chr3 (58-172)||(30935014-30935127)
[»] chr2 (25 HSPs)
chr2 (56-177)||(20572401-20572521)
chr2 (65-176)||(27740325-27740435)
chr2 (56-177)||(22884746-22884867)
chr2 (29-176)||(2063179-2063327)
chr2 (62-149)||(13337584-13337671)
chr2 (74-177)||(29487447-29487548)
chr2 (72-178)||(33788257-33788362)
chr2 (60-177)||(10173211-10173328)
chr2 (67-178)||(25504520-25504630)
chr2 (62-178)||(4472277-4472393)
chr2 (68-177)||(4975085-4975194)
chr2 (68-177)||(4992993-4993102)
chr2 (56-144)||(24308375-24308463)
chr2 (118-185)||(30965919-30965986)
chr2 (59-166)||(44594009-44594116)
chr2 (62-178)||(7696295-7696411)
chr2 (106-175)||(8793495-8793564)
chr2 (56-176)||(6173851-6173970)
chr2 (126-177)||(33533376-33533427)
chr2 (62-177)||(37770285-37770397)
chr2 (56-148)||(41113401-41113493)
chr2 (64-177)||(15361059-15361172)
chr2 (57-135)||(16952018-16952096)
chr2 (57-135)||(17022683-17022761)
chr2 (72-177)||(37559800-37559905)
[»] chr5 (14 HSPs)
chr5 (74-178)||(23426646-23426750)
chr5 (62-177)||(26405180-26405295)
chr5 (67-178)||(8731277-8731387)
chr5 (56-152)||(24071918-24072014)
chr5 (94-177)||(17853111-17853194)
chr5 (62-178)||(25992335-25992451)
chr5 (62-178)||(13953877-13953995)
chr5 (62-185)||(8297805-8297927)
chr5 (62-152)||(30097667-30097757)
chr5 (68-176)||(31742504-31742611)
chr5 (62-167)||(27713406-27713512)
chr5 (62-178)||(7194932-7195048)
chr5 (62-176)||(26045596-26045710)
chr5 (62-100)||(33258598-33258636)
[»] chr1 (25 HSPs)
chr1 (62-177)||(38546815-38546930)
chr1 (33-173)||(38544352-38544492)
chr1 (56-152)||(41126108-41126204)
chr1 (62-177)||(9312972-9313087)
chr1 (56-177)||(27905760-27905880)
chr1 (62-178)||(27102516-27102632)
chr1 (73-166)||(17033939-17034032)
chr1 (71-151)||(37200485-37200565)
chr1 (56-185)||(32882695-32882820)
chr1 (62-177)||(34775206-34775320)
chr1 (67-121)||(32863234-32863288)
chr1 (62-178)||(49820489-49820606)
chr1 (125-185)||(30762013-30762073)
chr1 (62-177)||(11439652-11439767)
chr1 (82-177)||(26602457-26602550)
chr1 (59-177)||(46603691-46603809)
chr1 (68-152)||(376463-376547)
chr1 (62-177)||(9557241-9557357)
chr1 (115-178)||(10605082-10605145)
chr1 (63-162)||(52278617-52278714)
chr1 (112-178)||(7451892-7451958)
chr1 (56-177)||(10785093-10785214)
chr1 (122-182)||(27431351-27431411)
chr1 (58-100)||(16149106-16149148)
chr1 (29-87)||(16577585-16577643)
[»] chr4 (13 HSPs)
chr4 (72-185)||(12296518-12296630)
chr4 (74-182)||(20632124-20632233)
chr4 (57-178)||(19814848-19814970)
chr4 (29-142)||(46487581-46487694)
chr4 (62-178)||(28967209-28967324)
chr4 (54-177)||(41117600-41117723)
chr4 (111-177)||(37347297-37347363)
chr4 (57-104)||(39420741-39420788)
chr4 (62-178)||(38930122-38930238)
chr4 (68-177)||(42719496-42719605)
chr4 (120-184)||(13528739-13528803)
chr4 (130-178)||(21983506-21983553)
chr4 (85-178)||(9262800-9262893)
[»] scaffold1613 (1 HSPs)
scaffold1613 (33-173)||(631-771)
[»] chr8 (7 HSPs)
chr8 (56-185)||(12197699-12197828)
chr8 (56-185)||(12442127-12442256)
chr8 (29-177)||(25184754-25184900)
chr8 (106-178)||(2613178-2613250)
chr8 (91-178)||(8843745-8843830)
chr8 (56-177)||(9831629-9831756)
chr8 (139-177)||(22325734-22325772)
[»] chr7 (18 HSPs)
chr7 (34-178)||(31409591-31409736)
chr7 (65-172)||(9427715-9427822)
chr7 (73-178)||(28534136-28534240)
chr7 (58-178)||(3478679-3478798)
chr7 (58-152)||(23983574-23983668)
chr7 (62-176)||(42532892-42533006)
chr7 (62-177)||(26385792-26385903)
chr7 (112-177)||(47456706-47456770)
chr7 (81-177)||(6726051-6726147)
chr7 (76-176)||(48058306-48058405)
chr7 (58-177)||(9107481-9107600)
chr7 (71-178)||(13312180-13312287)
chr7 (70-157)||(16828752-16828839)
chr7 (60-177)||(40292642-40292757)
chr7 (112-176)||(33719349-33719413)
chr7 (120-184)||(9657715-9657779)
chr7 (62-177)||(6716368-6716483)
chr7 (60-185)||(2359342-2359470)
[»] scaffold0050 (1 HSPs)
scaffold0050 (56-177)||(37035-37156)
[»] scaffold0063 (1 HSPs)
scaffold0063 (62-160)||(58462-58560)
[»] scaffold0002 (1 HSPs)
scaffold0002 (115-178)||(426559-426622)


Alignment Details
Target: chr6 (Bit Score: 785; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 29 - 904
Target Start/End: Complemental strand, 17278242 - 17277367
Alignment:
Q  29 agggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatca 128  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  17278242 agggtttggctagatcttgtgttcaatggtgtcttttatgatgtttattttcgggtgttccgcctatatacgacgcctttagattgtattctctgaatca 17278143  T
Q  129 ccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgccgttaaatnnnnnnnnntccattacacgctctctaattctttccatatat 228  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||         || ||||||||||||||||||||||||||||||    
T  17278142 ccggtctctgttcatcttaagcagcgatctggtttttaaataaaatttgccgttaaataaaaaaaaatcaattacacgctctctaattctttccatatat 17278043  T
Q  229 aatttttggttttgattcttcaatttttataattctttatgatatgttgtaagacattgaaacagttatatgcaaataaggcaatttatttgtacgattg 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17278042 aatttttggttttgattcttcaatttttataattctttatgatatgttgtaagacattgaaacagttatatgcaaataaggcaatttatttgtacgatta 17277943  T
Q  329 cagagcatgatagacgtcatggaaattagaatgattgaaatgaaaattaaatgggcgcaagagtagttatatagagctagataacgattcctaacaactt 428  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17277942 caaagcatgatagacgtcatggaaattagaatgattgaaatgaaaattaaatgggcgcaagagtagttatatagagctagataacgattcctaacaactt 17277843  T
Q  429 gaatttcctagtcatctcaattagctttaacagggtggaaggagttttaaactctgttagatatcataaatacatcagctaaatatgacatgaacaaagt 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17277842 gaatttcctagtcatctcaattagctttaacagggtggaaggagttttaaactctgttagatatcataaatacatcagctaaatatgacatgaacaaagt 17277743  T
Q  529 ttaacaaccatgcatggtagaagccatcaaagtcttgaatcaaaagattaaccatttaagtagaagctaaaataatcgaagtcatttgtttcttataaat 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17277742 ttaacaaccatgcatggtagaagccatcaaagtcttgaatcaaaagattaaccatttaagtagaagctaaaataatcgaagtcatttgtttcttataaat 17277643  T
Q  629 tactgcattactaatatttccacactaccaaatcaacaaaaactttaaaaacannnnnnnnctttctattttgtaagaagtaattctttgttagggttta 728  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  17277642 tactgcattactaatatttccacactaccaaatcaacaaaaactttaaaaacattttttttctttctattttgtaagaagtaattctttgttagggttta 17277543  T
Q  729 gtgtgtgaaacctcggcggcatctttatagtacataaacggaggcaacctttctcttccttttgctccgggcaagcctcccggtcatgaggccactgtaa 828  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17277542 gtgtgtgaaacctcggcggcatctttatagtacataaacggaggcaacctttctcttccttttgctccgggcaagcctcccggtcatgaggccactgtaa 17277443  T
Q  829 ctaccaccagaagtacggccaaacctcccatttagaggccacaccttccaaaatctttcttcctttgtttcttctc 904  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17277442 ctaccaccagaagtacggccaaacctcccatttagaggccacaccttccaaaatctttcttcctttgtttcttctc 17277367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 196 - 413
Target Start/End: Complemental strand, 17266206 - 17265993
Alignment:
Q  196 tccattacacgctctctaattctttccatatataatttttggttttgattcttcaatttttataattctttatgatatgttgtaagacattgaaacagtt 295  Q
    |||||||| || || ||||||||||| ||||||| ||||| |  || || |||   |||||| || || |||||||||||||||||||||||||| ||||    
T  17266206 tccattactcgatccctaattctttcgatatatatttttttgcattaatactttcgtttttaaaagtcattatgatatgttgtaagacattgaaatagtt 17266107  T
Q  296 atatgcaaataaggcaatttatttgtacgattgcagagcatgatagacgtcatggaaattagaatgattgaaatgaaaattaaatgggcgcaagagtagt 395  Q
    ||||||||||| ||||    || ||||| ||| || ||||| |||||||||||| |||||||||| |||  |||||||||||||||  | ||||||| ||    
T  17266106 atatgcaaatatggca----atctgtaccattacaaagcataatagacgtcatgaaaattagaatcattcgaatgaaaattaaatgaacacaagagtggt 17266011  T
Q  396 tatatagagctagataac 413  Q
    ||| || |||||||||||    
T  17266010 tatgtaaagctagataac 17265993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 32934070 - 32933979
Alignment:
Q  85 gttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 177  Q
    ||||||||||||||||||   ||||| ||||||| ||| ||||||| |||||||||| ||||||||||  |||||||| ||||||||||||||    
T  32934070 gttccacctatatacgacgtctttagtttgtattatct-aatcaccagtctctgttcatcttgagcaggaatctggttgttaaataaaatttg 32933979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 3880359 - 3880244
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| ||||||||||||  |||||||| | ||||||||  || ||| | ||||||| || |  ||||||||||||||||||||||||||| |||||| |    
T  3880359 ttttagggtgtttattttttggtgttccgcttatatacggaaccttttgtttgtattttcagtttcaccggtctctgttcgtcttgagcagggatctgat 3880260  T
Q  162 ttttaaataaaatttg 177  Q
    | || |||||||||||    
T  3880259 tgtttaataaaatttg 3880244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 176
Target Start/End: Original strand, 9224263 - 9224380
Alignment:
Q  58 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatc 157  Q
    |||||||  |||||||||||||||||||||||  ||||||||||||| ||| | ||||| | |||  || ||| ||||||||||||||||  ||| |||     
T  9224263 tgtctttgttggtgtttattttcgggtgttccttctatatacgacaccttttggttgtactttctttattaccagtctctgttcgtcttgtacagggatt 9224362  T
Q  158 tggtttttaaataaaattt 176  Q
    | |||||| ||||||||||    
T  9224363 tagttttt-aataaaattt 9224380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 13423718 - 13423812
Alignment:
Q  84 tgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 178  Q
    |||||| |||||||||||| | |||||||||||||||| |  |||  ||||||||||||||||||| || || ||  |  |||||||||||||||    
T  13423718 tgttccgcctatatacgacgcctttagattgtattctcagtttcaaaggtctctgttcgtcttgaggagggacctaatggttaaataaaatttgc 13423812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 20701537 - 20701425
Alignment:
Q  69 gtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaa 168  Q
    |||||||||| | |||||||| |||||||||  | | ||| | |||||||||| |  |||||| ||||||||||||||||| || ||| ||||| || ||    
T  20701537 gtgtttatttccaggtgttccgcctatatacagcgccttttgtttgtattctcagtttcaccgatctctgttcgtcttgag-agggatttggttgtttaa 20701439  T
Q  169 taaaatttgccgtt 182  Q
    ||||||||| ||||    
T  20701438 taaaatttgtcgtt 20701425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 16180553 - 16180488
Alignment:
Q  112 ttgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 178  Q
    ||||||| ||||  |||||| ||| |||||||||||||||| |||||| ||||| ||||||||||||    
T  16180553 ttgtattatctgtttcaccgatctttgttcgtcttgagcagagatctgattttt-aataaaatttgc 16180488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 20500282 - 20500323
Alignment:
Q  57 gtgtcttttatggtgtttattttcgggtgttccacctatatac 99  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  20500282 gtgtcttttatggtgtttatttt-gggtgttccgcctatatac 20500323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 4043387 - 4043342
Alignment:
Q  139 ttcgtcttgagcagcgatctggtttttaaataaaatttgccgttaa 184  Q
    |||||||||||||| ||| || |||||||||||||||||| |||||    
T  4043387 ttcgtcttgagcagagatttgatttttaaataaaatttgctgttaa 4043342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 32010117 - 32010236
Alignment:
Q  58 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatc 157  Q
    ||||||||| ||||||||||||| ||| |||| |||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||||| || ||||    
T  32010117 tgtcttttaaggtgtttattttcaggtattccgcctatatacgacgcttttaggttgtattctctgaatcaccgatctctgttcgtcttgagtagggatc 32010216  T
Q  158 tggtttttaaataaaatttg 177  Q
    ||||| ||||||||||||||    
T  32010217 tggttgttaaataaaatttg 32010236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 823161 - 823028
Alignment:
Q  45 ttgtgtttaatggtgtctttt-atggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgt 143  Q
    |||||| ||| |||||||||| |||||||||| ||| ||||||||| | |||||||||| | ||||  ||||| ||||||||||||||||||||||||||    
T  823161 ttgtgtgtaagggtgtctttttatggtgtttaattt-gggtgttccccttatatacgacgcctttaacttgtagtctctgaatcaccggtctctgttcgt 823063  T
Q  144 cttgagcagcgatctggtttttaaataaaatttgc 178  Q
    |||||||||||||||||||||| ||||||||||||    
T  823062 cttgagcagcgatctggttttttaataaaatttgc 823028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 25594255 - 25594142
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    |||||||||||||| ||||||||||||| |||||||||||| |||||   || ||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  25594255 ttttatggtgtttactttcgggtgttccgcctatatacgacgcattttatttttattctctgaatcaccgatctctgtttgtcttgagcagtgatctggt 25594156  T
Q  162 ttttaaataaaatt 175  Q
    ||||||||||||||    
T  25594155 ttttaaataaaatt 25594142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 46358135 - 46358014
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 155  Q
    ||||||||||| ||||||||||||| |||||| | |||||||||  |   ||||| ||||||| |||||||| | |||||||||||||||||||||| ||    
T  46358135 ggtgtcttttaaggtgtttattttcaggtgtttcgcctatatacagcgtctttagtttgtattttctgaatctctggtctctgttcgtcttgagcaggga 46358036  T
Q  156 tctggtttttaaataaaatttg 177  Q
    ||||||| ||||||||||||||    
T  46358035 tctggttgttaaataaaatttg 46358014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 45354688 - 45354540
Alignment:
Q  29 agggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatca 128  Q
    ||||||||||||| |  ||||| ||  ||||||||||||| ||||||||||||| | |||| ||| ||||| |||| ||||  ||||||||||| |||||    
T  45354688 agggtttggctaggtgctgtgtgtaggggtgtcttttatgatgtttattttcggatattccgcctctatacaacacctttaatttgtattctctaaatca 45354589  T
Q  129 ccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 177  Q
     ||||||||| ||||||||||||  ||| | ||||||||||||||||||    
T  45354588 tcggtctctgctcgtcttgagcacggatatagtttttaaataaaatttg 45354540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 50518836 - 50518721
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||| | |||||||||| |  ||||| ||||||||||||||||||||| ||||   |    
T  50518836 ttttagggtgtttattttcgggtgttccgcctatatacgacaccttttgtttgtattctcagtttcaccagtctctgttcgtcttgagcagggatcaaat 50518737  T
Q  162 ttttaaataaaatttg 177  Q
    | || |||||||||||    
T  50518736 tgtttaataaaatttg 50518721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 27399325 - 27399446
Alignment:
Q  65 tatggtgtttattttcgggtgttccacctatatacgaca-catttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggttt 163  Q
    ||||||||||||||| ||||||| ||||||||||| ||  | ||||  ||||||| |||||||||  | |||||||| ||||||||||| ||||||| ||    
T  27399325 tatggtgtttatttttgggtgtttcacctatatacaacgtcttttaatttgtattttctgaatcatggttctctgtttgtcttgagcagggatctggatt 27399424  T
Q  164 ttaaataaaatttgccgttaaa 185  Q
    ||||||||||||| | ||||||    
T  27399425 ttaaataaaatttactgttaaa 27399446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 4171078 - 4171193
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| ||||||||||||| |||||||| |||||||||||| | ||| | |||||||||| |  ||||||||||||||||||||| ||||| ||| | ||    
T  4171078 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttagt 4171177  T
Q  162 ttttaaataaaatttg 177  Q
    | || |||| ||||||    
T  4171178 tgtttaatagaatttg 4171193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 40689512 - 40689392
Alignment:
Q  29 agggtttggc-tagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatc 127  Q
    |||||||||| ||||  |||||| ||| | ||||||||||| | |||||||| ||||||| | | ||||||| |||| ||||| ||||| ||||| || |    
T  40689512 agggtttggcctagaagttgtgtgtaaggatgtcttttatgatatttatttttgggtgtttcgcttatatacaacacttttagtttgtactctcttaacc 40689413  T
Q  128 accggtctctgttcgtcttga 148  Q
    |||||||||||| ||||||||    
T  40689412 accggtctctgtccgtcttga 40689392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 14893264 - 14893379
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| ||||||||||||| |||||||| |||||||||| |   ||| | ||||| |||| |  ||||| |||||||||| ||||||||||  |||||||    
T  14893264 ttttagggtgtttattttcaggtgttccgcctatatacggcgtcttttgtttgtactctcggtttcaccagtctctgttcatcttgagcagttatctggt 14893363  T
Q  162 ttttaaataaaatttg 177  Q
    | || |||||||||||    
T  14893364 tgtttaataaaatttg 14893379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 33143685 - 33143584
Alignment:
Q  76 ttttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatt 175  Q
    |||||||||||||| |||||||| ||| | ||| | |||||||||| |  |||||| | | |||||| ||||||||| ||||||||| || |||||||||    
T  33143685 ttttcgggtgttccgcctatatatgacgccttttggttgtattctcagtttcaccgatttatgttcgccttgagcagagatctggttgtttaataaaatt 33143586  T
Q  176 tg 177  Q
    ||    
T  33143585 tg 33143584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 25648017 - 25648133
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| ||||||||||||||||||||||  ||||||||  | | ||| | |||||||||  |  |||||| |||||||||||||||| ||| |||  |||    
T  25648017 ttttagggtgtttattttcgggtgttccgtctatatactgcgccttttgtttgtattcttagtttcaccgatctctgttcgtcttgaacagggattaggt 25648116  T
Q  162 ttttaaataaaatttgc 178  Q
    | || ||| ||||||||    
T  25648117 tgtttaattaaatttgc 25648133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 37123710 - 37123794
Alignment:
Q  68 ggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcag 152  Q
    ||||||||||||||||||||||  |||| || ||| | ||| | |||||||||| |  ||| ||||||| |||||||||||||||    
T  37123710 ggtgtttattttcgggtgttccgactatgtaggacgccttttgtttgtattctcagtttcatcggtctcagttcgtcttgagcag 37123794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 48893093 - 48892986
Alignment:
Q  69 gtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaa 168  Q
    |||||||||||||| |||||| | |||||||| ||   || | |||||||||| |  ||| | |||| |||||||||||||||| ||||| ||| || ||    
T  48893093 gtgtttattttcggatgttcctcttatatacggcatcgtttgtttgtattctcagtttcatctgtctttgttcgtcttgagcagggatctagttgtttaa 48892994  T
Q  169 taaaattt 176  Q
    ||||||||    
T  48892993 taaaattt 48892986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 30935127 - 30935014
Alignment:
Q  58 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatc 157  Q
    |||||||  |||||||| |||||||||||| | | ||||||||||||  |||| ||||||| || | |  ||||||||||||||||||||  ||| || |    
T  30935127 tgtctttgttggtgtttgttttcgggtgtttcgcttatatacgacac-cttagtttgtattttcagtaagaccggtctctgttcgtcttgtacagagacc 30935029  T
Q  158 tggtttttaaataaa 172  Q
    || ||||||| ||||    
T  30935028 tgatttttaattaaa 30935014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 20572401 - 20572521
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 155  Q
    |||||||||||||||||||||||| | ||||| |||||||||||||||||||| | || |||||||||||||| |||||||||||||| ||||| || ||    
T  20572401 ggtgtcttttatggtgtttatttt-gagtgtttcacctatatacgacacattttgtttctattctctgaatcatcggtctctgttcgttttgaggagaga 20572499  T
Q  156 tctggtttttaaataaaatttg 177  Q
    | ||||||||||||||||||||    
T  20572500 tgtggtttttaaataaaatttg 20572521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 27740325 - 27740435
Alignment:
Q  65 tatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttt 164  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||| || ||| ||||||||||||||||  ||||||||||    
T  27740325 tatggagtttattttcgggtgttccacctatatacgacgcctttagtttgtattatctgaatcatcgatctttgttcgtcttgagcag-aatctggtttt 27740423  T
Q  165 taaataaaattt 176  Q
    ||||||||||||    
T  27740424 taaataaaattt 27740435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 22884867 - 22884746
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 155  Q
    ||||| || ||||| ||||||||||||||||||| |||||||||||| | ||||| |||||||||||  |||  |||||| |||||||||||||||| ||    
T  22884867 ggtgttttgtatggagtttattttcgggtgttccgcctatatacgacgcctttagtttgtattctctatatcgtcggtctttgttcgtcttgagcagaga 22884768  T
Q  156 tctggtttttaaataaaatttg 177  Q
    | ||||||||||||||||||||    
T  22884767 tttggtttttaaataaaatttg 22884746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 2063179 - 2063327
Alignment:
Q  29 agggtttggctagatcttgtgtttaatggtgtcttttatggtgtttatttt-cgggtgttccacctatatacgacacatttagattgtattctctgaatc 127  Q
    |||||||| |||| | |||||| ||  | |||||||||||||||||||||| |||||||| | |||||||||| ||| ||| | |||||||| ||||||     
T  2063179 agggtttgactaggtgttgtgtgtagggatgtcttttatggtgtttatttttcgggtgtttcgcctatatacggcacctttcgtttgtattcgctgaatt 2063278  T
Q  128 accggtctctgttcgtcttgagcagcgatctggtttttaaataaaattt 176  Q
    |||||||  |||| ||||||||||| ||||  |||||||||||||||||    
T  2063279 accggtcgatgtttgtcttgagcagagatcgagtttttaaataaaattt 2063327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 13337584 - 13337671
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgag 149  Q
    ||||| ||||||||||||| ||||||||||||||||||||| | ||| | ||||||||||||  ||||||||||||||||||||||||    
T  13337584 ttttagggtgtttattttcaggtgttccacctatatacgacgccttttgtttgtattctctgtttcaccggtctctgttcgtcttgag 13337671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 29487447 - 29487548
Alignment:
Q  74 tattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaa 173  Q
    ||||||| |||||||| |||||||||| | | ||||| ||||||||| |||||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  29487447 tattttcaggtgttccgcctatatacggctcctttag-ttgtattctatgaatcaccggtctctgttcatcttgagcagggatctggttttt-aataaaa 29487544  T
Q  174 tttg 177  Q
    ||||    
T  29487545 tttg 29487548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 33788362 - 33788257
Alignment:
Q  72 tttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataa 171  Q
    |||||||||||||||||| | |||||||| | | ||||| |||||||||| | |||||||||||||||||||||| ||||| ||| ||| ||||||||||    
T  33788362 tttattttcgggtgttccgcatatatacggcgcctttagtttgtattctcggtatcaccggtctctgttcgtctttagcagagatttgg-ttttaaataa 33788264  T
Q  172 aatttgc 178  Q
    |||||||    
T  33788263 aatttgc 33788257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 10173328 - 10173211
Alignment:
Q  60 tcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctg 159  Q
    ||||||| ||||||||||||| |||||||| ||||||||| || | ||||| ||||||| | ||  |||||| ||||||||||||||||||||  |||||    
T  10173328 tcttttagggtgtttattttcaggtgttccgcctatatacaacgcttttagtttgtattatatgtttcaccgatctctgttcgtcttgagcaggaatctg 10173229  T
Q  160 gtttttaaataaaatttg 177  Q
    ||| |||| |||||||||    
T  10173228 gttgttaagtaaaatttg 10173211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 67 - 178
Target Start/End: Complemental strand, 25504630 - 25504520
Alignment:
Q  67 tggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggttttta 166  Q
    ||||||||||||| ||||||| |  ||||||||| | | ||| | |||||||||||||||||||||| |||||| ||||||||||| |||||| |||||     
T  25504630 tggtgtttatttttgggtgtttcgtctatatacggcgccttttgtttgtattctctgaatcaccggtttctgtttgtcttgagcagggatctgattttt- 25504532  T
Q  167 aataaaatttgc 178  Q
    ||||||||||||    
T  25504531 aataaaatttgc 25504520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 4472277 - 4472393
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||||||||||||||||||| ||||||  ||||||||||| | ||||| ||||||||||||| ||||||  |||||||| |||||| | | |||| | |    
T  4472277 ttttatggtgtttattttcggatgttccgtctatatacgacgcctttagtttgtattctctgattcaccgaactctgttcatcttgaacggggatcagat 4472376  T
Q  162 ttttaaataaaatttgc 178  Q
    | || ||||||||||||    
T  4472377 tgttgaataaaatttgc 4472393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 4975085 - 4975194
Alignment:
Q  68 ggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaa 167  Q
    |||||||||||||||||||||  |||||||||||| | ||||| |||||||||  |  ||||  ||||||||||||||||||||| || ||| |  ||||    
T  4975085 ggtgtttattttcgggtgttcagcctatatacgacgcctttagtttgtattcttagtttcactagtctctgttcgtcttgagcagagacctgatggttaa 4975184  T
Q  168 ataaaatttg 177  Q
    ||||||||||    
T  4975185 ataaaatttg 4975194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 4992993 - 4993102
Alignment:
Q  68 ggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaa 167  Q
    |||||||||||||||||||||  |||||||||||| | ||||| |||||||||  |  ||||  ||||||||||||||||||||| || ||| |  ||||    
T  4992993 ggtgtttattttcgggtgttcagcctatatacgacgcctttagtttgtattcttagtttcactagtctctgttcgtcttgagcagagacctgatggttaa 4993092  T
Q  168 ataaaatttg 177  Q
    ||||||||||    
T  4993093 ataaaatttg 4993102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 24308463 - 24308375
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtc 144  Q
    ||||||||||||| |||||| ||| | ||||||| | |||||||||  | ||||| ||||||||||| |||||||||||||||||||||    
T  24308463 ggtgtcttttatgatgtttacttttgagtgttcctcatatatacgatgcttttagtttgtattctctaaatcaccggtctctgttcgtc 24308375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 30965986 - 30965919
Alignment:
Q  118 tctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgccgttaaa 185  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||| | ||||||    
T  30965986 tctctgaatcaccggtctttgttcgtcttgagtagggatctggtttttaaataaatttttctgttaaa 30965919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 44594009 - 44594116
Alignment:
Q  59 gtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatct 158  Q
    ||||||| |||||||||||||||| | ||||| ||||| ||||| | ||| | ||||||||||||||| | | |||| ||||||| ||||| || |||||    
T  44594009 gtcttttttggtgtttattttcggatattccatctatacacgacgccttttgtttgtattctctgaattatcagtctatgttcgttttgagtagggatct 44594108  T
Q  159 ggttttta 166  Q
    ||||||||    
T  44594109 ggttttta 44594116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 7696295 - 7696411
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| |||||||||||| ||||||||| ||||||||||   | ||| | ||||||||||    ||| |||||||||||| |||||||||| ||| ||||    
T  7696295 ttttaaggtgtttatttttgggtgttccgcctatatacggttccttttgtttgtattctcaatttcatcggtctctgttcatcttgagcagggatttggt 7696394  T
Q  162 ttttaaataaaatttgc 178  Q
    | || ||||||||||||    
T  7696395 tgttcaataaaatttgc 7696411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 8793495 - 8793564
Alignment:
Q  106 tttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatt 175  Q
    ||||| ||||||| ||| |||||||||||| ||||||| || ||||| |||||||||| |||||||||||    
T  8793495 tttagtttgtattttctaaatcaccggtctttgttcgtttttagcagagatctggtttataaataaaatt 8793564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 6173970 - 6173851
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 155  Q
    ||||||| || |||||||| |||| |||||||||||||||||||||    ||||| ||||| | || | | ||| |||||| |||||||||| |||| ||    
T  6173970 ggtgtctcttttggtgtttgtttttgggtgttccacctatatacgatgtctttagtttgtactttccgtaacactggtctcagttcgtcttgtgcagaga 6173871  T
Q  156 tctggtttttaaataaaattt 176  Q
    |||| ||||| ||||||||||    
T  6173870 tctgattttt-aataaaattt 6173851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 33533427 - 33533376
Alignment:
Q  126 tcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 177  Q
    ||||| ||||||||||||||||||||| ||||||| | ||||||||||||||    
T  33533427 tcaccagtctctgttcgtcttgagcagagatctggctgttaaataaaatttg 33533376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 37770397 - 37770285
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| |||||||||||||||||||||| |||||||||||| |   | | ||||||||||  | |||||| |||||||| ||||||| ||  ||||| |     
T  37770397 ttttagggtgtttattttcgggtgttccgcctatatacgacgc---ttgtttgtattctcatattcaccgatctctgtttgtcttgatcatggatctagc 37770301  T
Q  162 ttttaaataaaatttg 177  Q
    | || |||||||||||    
T  37770300 tgttcaataaaatttg 37770285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 41113493 - 41113401
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttga 148  Q
    ||||| ||||| ||| ||||||||||| |||||| ||||||||| |    ||||| |||||||||| |  |||||||||||| ||||||||||    
T  41113493 ggtgttttttagggtatttattttcggatgttccgcctatatacaatgtctttagtttgtattctcagtttcaccggtctcttttcgtcttga 41113401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 15361059 - 15361172
Alignment:
Q  64 ttatggtgtttattttc-gggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtt 162  Q
    ||||||||||||||||  ||||||| |  ||||||||| | | ||| | ||||||| ||||  ||||| |||||| |||||||||||||| ||| || ||    
T  15361059 ttatggtgtttattttttgggtgtttcgtctatatacggcgcctttcgtttgtattatctgtttcaccagtctctattcgtcttgagcagggatttgatt 15361158  T
Q  163 tttaaataaaatttg 177  Q
    ||| |||||||||||    
T  15361159 ttt-aataaaatttg 15361172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 16952096 - 16952018
Alignment:
Q  57 gtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtct 135  Q
    |||||||||||| |||||||||| || |||||  ||||||||||||   | ||| ||||||||||| ||||||| ||||    
T  16952096 gtgtcttttatgatgtttatttttggatgttctgcctatatacgacgtctatagtttgtattctctaaatcacctgtct 16952018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 17022761 - 17022683
Alignment:
Q  57 gtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtct 135  Q
    |||||||||||| |||||||||| || |||||  ||||||||||||   | ||| ||||||||||| ||||||| ||||    
T  17022761 gtgtcttttatgatgtttatttttggatgttctgcctatatacgacgtctatagtttgtattctctaaatcacctgtct 17022683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 37559800 - 37559905
Alignment:
Q  72 tttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataa 171  Q
    |||||| |||||||||||  || | ||||  || ||||| ||||||||||    |||||| |||||||||||||| | ||| |||||  |||||||||||    
T  37559800 tttattctcgggtgttccgtctttgtacggaacctttagtttgtattctcaatttcaccgatctctgttcgtcttaaacagggatctcatttttaaataa 37559899  T
Q  172 aatttg 177  Q
    ||||||    
T  37559900 aatttg 37559905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 2e-30; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 23426646 - 23426750
Alignment:
Q  74 tattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaa 173  Q
    |||||||||||||||| |||||||||| ||| |||   |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  23426646 tattttcgggtgttccgcctatatacggcaccttttagttgtattctctgaatcaccggtctctgttcctcttgagcagcaatctgatttttaaataaaa 23426745  T
Q  174 tttgc 178  Q
    |||||    
T  23426746 tttgc 23426750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 26405295 - 26405180
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| ||||||||||||||||||||||  ||||||||||| | ||| | |||||||||| |  |||||||||| ||||||||||||||||  |||||||    
T  26405295 ttttaaggtgtttattttcgggtgttccgactatatacgacgccttttgtttgtattctcagtttcaccggtctttgttcgtcttgagcagaaatctggt 26405196  T
Q  162 ttttaaataaaatttg 177  Q
    | || |||||||||||    
T  26405195 tgtttaataaaatttg 26405180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 8731277 - 8731387
Alignment:
Q  67 tggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggttttta 166  Q
    ||||||||||||| ||||||| |  ||||||||| | | ||| | |||||||||||||||||||||| |||||| ||||||||||| |||||| |||||     
T  8731277 tggtgtttatttttgggtgtttcgtctatatacggcgccttttgtttgtattctctgaatcaccggtttctgtttgtcttgagcagggatctgattttt- 8731375  T
Q  167 aataaaatttgc 178  Q
    ||||||||||||    
T  8731376 aataaaatttgc 8731387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 24072014 - 24071918
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcag 152  Q
    ||||||||||||| |||||||||||||||||||| |||||||||| | |  |||| ||||||| ||||||||| |||||| |||| ||||| |||||    
T  24072014 ggtgtcttttatgatgtttattttcgggtgttccgcctatatacggcgcccttagtttgtattatctgaatcatcggtctttgtttgtcttaagcag 24071918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 17853194 - 17853111
Alignment:
Q  94 atatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 177  Q
    ||||||| | ||||||| ||||||| |||||||||||||| | | ||| |||||||||| ||||||||||||||||||||||||    
T  17853194 atatacggcgcatttagtttgtattttctgaatcaccggtttatattcatcttgagcagggatctggtttttaaataaaatttg 17853111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 25992335 - 25992451
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| |||||||||| ||||||||||| | |||||||| | | ||| | ||||||| ||    ||||||||||||||||||||||||||| ||||||||    
T  25992335 ttttagggtgtttattgtcgggtgttccgcatatatacggcgccttttgtttgtattatcattttcaccggtctctgttcgtcttgagcagagatctggt 25992434  T
Q  162 ttttaaataaaatttgc 178  Q
    | || ||||| ||||||    
T  25992435 tgtttaataatatttgc 25992451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 178
Target Start/End: Complemental strand, 13953995 - 13953877
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaat--caccggtctctgttcgtcttgagcagcgatctg 159  Q
    ||||| ||||||||||||| |||||||| |||||||||| | | ||||| ||||| |||| |  |  |||||||||||||||||||||||||| || |||    
T  13953995 ttttaaggtgtttattttcaggtgttccgcctatatacggcgcctttagtttgtactctcagtttcacaccggtctctgttcgtcttgagcagagacctg 13953896  T
Q  160 gtttttaaataaaatttgc 178  Q
    |   |||||||||||||||    
T  13953895 gaggttaaataaaatttgc 13953877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 8297805 - 8297927
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| ||||| ||||||| |||||||| ||||| ||| || | |||   |||||||||| |  |||||||||||||||||||||||| || |||||| |    
T  8297805 ttttagggtgtgtattttcaggtgttccgcctatgtacaacgccttttt-ttgtattctcagtttcaccggtctctgttcgtcttgagtagagatctgat 8297903  T
Q  162 ttttaaataaaatttgccgttaaa 185  Q
    | || |||||||||||| ||||||    
T  8297904 tgttcaataaaatttgctgttaaa 8297927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 30097667 - 30097757
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcag 152  Q
    ||||| |||||||||||||||||||||| |||||||||| |   ||||| ||||||||| | | | |||||||| |||||||||| |||||    
T  30097667 ttttagggtgtttattttcgggtgttccgcctatatacggcgtctttagtttgtattctttaatttaccggtctttgttcgtcttaagcag 30097757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 31742504 - 31742611
Alignment:
Q  68 ggtgtttattttcgggtgttccacctatatacgacacatttagattgta-ttctctgaatcaccggtctctgttcgtcttgagcagcgatctggttttta 166  Q
    ||||||| |||||||||||||| |||||||||| | | ||| | ||||| |||| || | ||||||||||||||||||||| |||| |||| |||||||     
T  31742504 ggtgtttgttttcgggtgttccgcctatatacggcgccttttgtttgtacttct-tgtaacaccggtctctgttcgtcttgtgcagggatcaggttttt- 31742601  T
Q  167 aataaaattt 176  Q
    ||||||||||    
T  31742602 aataaaattt 31742611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 27713406 - 27713512
Alignment:
Q  62 ttttatggtgtttatttt-cgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctgg 160  Q
    |||||||| ||||||||| |||||||||| |||||||| | | | ||| | |||||| ||| |  |||| |||||| ||||||||||| ||| |||||||    
T  27713406 ttttatggagtttatttttcgggtgttccgcctatatatggcgcctttcgtttgtatcctcagtttcactggtctcagttcgtcttgaacagggatctgg 27713505  T
Q  161 tttttaa 167  Q
    |||||||    
T  27713506 tttttaa 27713512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 178
Target Start/End: Complemental strand, 7195048 - 7194932
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| |||||||||||| || |||||| | |||| ||||| ||||| |  | ||||||| |  ||| || ||| ||||||||||||| || ||||||||    
T  7195048 ttttagggtgtttatttttggatgttccgcatataaacgactcattttgtctatattctcagtttcatcgatctttgttcgtcttgagtagggatctggt 7194949  T
Q  162 ttttaaataaaatttgc 178  Q
    | || ||||||||||||    
T  7194948 tgtttaataaaatttgc 7194932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 26045710 - 26045596
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| |||||||||||| || ||||||  ||||||||| | | ||| | |||||| |||    |||||||||||||||||| |||||||  ||||| ||    
T  26045710 ttttagggtgtttatttttggatgttccgtctatatacggcgccttttgtttgtatgctcaacttcaccggtctctgttcgttttgagcattgatctagt 26045611  T
Q  162 ttttaaataaaattt 176  Q
    | || ||||||||||    
T  26045610 tgtttaataaaattt 26045596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 33258636 - 33258598
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacg 100  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  33258636 ttttatggtgtttattttcgggtgtttcacatatatacg 33258598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 7e-30; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 38546930 - 38546815
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||| | ||| |||||||||||||||  ||||  ||    
T  38546930 ttttatggtttttattttcggatgttccgcctatatacgacacatttagtttgtactctctgaatcactgatctttgttcgtcttgagcaatgatcgagt 38546831  T
Q  162 ttttaaataaaatttg 177  Q
    ||||||||||||||||    
T  38546830 ttttaaataaaatttg 38546815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 38544492 - 38544352
Alignment:
Q  33 tttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccgg 132  Q
    ||||||||| | |||||| ||  | |||||||||||||||||||||||||||||||||| ||||||||||   ||||| |||||||||||||||||| |     
T  38544492 tttggctaggtgttgtgtgtagggatgtcttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctctgaatcacgga 38544393  T
Q  133 tctctgttcgtcttgagcagcgatctggtttttaaataaaa 173  Q
    ||| ||||||||||||||   ||||  ||||||||||||||    
T  38544392 tctttgttcgtcttgagctcggatcgagtttttaaataaaa 38544352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 41126204 - 41126108
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcag 152  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||||  | ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  41126204 ggtgtcttttataatgtttattttcgggtgttctacctatatacgatgcctttagtttgtattctctgaatcatcggtctctgttcgtcttgagcag 41126108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 9313087 - 9312972
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| |||||||||||||||||||||| |||||||||||| | ||| ||||||||| |  |  ||||||||||||||||||||||||||| ||||| ||    
T  9313087 ttttagggtgtttattttcgggtgttccgcctatatacgacgccttttgattgtattataagtttcaccggtctctgttcgtcttgagcagagatctcgt 9312988  T
Q  162 ttttaaataaaatttg 177  Q
    | || |||||||||||    
T  9312987 tgtttaataaaatttg 9312972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 27905760 - 27905880
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 155  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||| | | ||| ||||| ||||||| |||||||||||| ||| |||||||||| ||    
T  27905760 ggtgtcttttatggtgtttattttttg-tgttccacctatatacgacgcctctagtttgtagtctctgattcaccggtctctattcttcttgagcaggga 27905858  T
Q  156 tctggtttttaaataaaatttg 177  Q
    ||||||| || |||||| ||||    
T  27905859 tctggttgtttaataaattttg 27905880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 27102516 - 27102632
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| |||||||||||||||||||||| |||||||||| ||| ||| | |||||||||| |  ||||| |||| |||||||||||| ||| ||||||||    
T  27102516 ttttagggtgtttattttcgggtgttccgcctatatacggcaccttttgtttgtattctcaggttcaccagtctttgttcgtcttgaacagagatctggt 27102615  T
Q  162 ttttaaataaaatttgc 178  Q
    | || ||||||||||||    
T  27102616 tgtttaataaaatttgc 27102632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 17033939 - 17034032
Alignment:
Q  73 ttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggttttta 166  Q
    ||||||||||||||||| | |||||||||| | ||| | ||||||| |||||||||||||||| ||||| |||||||||  ||| |||||||||    
T  17033939 ttattttcgggtgttccgcttatatacgacgccttttgtttgtattatctgaatcaccggtctatgttcatcttgagcatagatttggttttta 17034032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 37200485 - 37200565
Alignment:
Q  71 gtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagca 151  Q
    |||||||||||| |||||| |||||||||||    ||||| |||||||||| | |||||||||||||||||||||||||||    
T  37200485 gtttattttcggatgttccgcctatatacgatgtctttagtttgtattctcggtatcaccggtctctgttcgtcttgagca 37200565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 32882695 - 32882820
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 155  Q
    ||||||||||| |||||||||||||||||||||  |||||||||| | | ||||| ||||||| ||||| || | |   |||||||||||||||||| ||    
T  32882695 ggtgtcttttagggtgtttattttcgggtgttctgcctatatacggcgcctttagtttgtattttctgattc-cag---tctgttcgtcttgagcaggga 32882790  T
Q  156 tctggtttttaaataaaatttgccgttaaa 185  Q
    | || || || |||||||||||| ||||||    
T  32882791 tgtgattgtttaataaaatttgctgttaaa 32882820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 34775206 - 34775320
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| |||||||||||||||||||||| |||||||||| | | ||||| |||||||||| |  | | |||||| |||||||||||||||| || ||| |    
T  34775206 ttttaaggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattctcagctttatcggtctttgttcgtcttgagcag-gacctgat 34775304  T
Q  162 ttttaaataaaatttg 177  Q
      ||||||||||||||    
T  34775305 gattaaataaaatttg 34775320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 32863288 - 32863234
Alignment:
Q  67 tggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctc 121  Q
    |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||    
T  32863288 tggtgtttattttcaggtgttccgcctatatacgacacatttagtttgtattctc 32863234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 49820489 - 49820606
Alignment:
Q  62 ttttatggtgtttattttc-gggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctgg 160  Q
    ||||||||||||||||||| ||||||||| |||| ||| |||   ||| | ||||||||||||| |||||| ||||| |  ||||||||||| |||| |     
T  49820489 ttttatggtgtttattttccgggtgttccgcctacatatgacgtctttggtttgtattctctgattcaccgatctctatctgtcttgagcagagatcaga 49820588  T
Q  161 tttttaaataaaatttgc 178  Q
    || |||||||||||||||    
T  49820589 ttgttaaataaaatttgc 49820606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 30762073 - 30762013
Alignment:
Q  125 atcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgccgttaaa 185  Q
    |||||| ||||||||||||||||||||  |||||| |||||||||||||||||| ||||||    
T  30762073 atcacctgtctctgttcgtcttgagcaaggatctgatttttaaataaaatttgctgttaaa 30762013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 11439767 - 11439652
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| ||||||||||||||| ||||||  ||||||| | | | ||| | ||||||||||    |||||| ||| |||||||||||||||| ||||||||    
T  11439767 ttttagggtgtttattttcggatgttccgtctatatatgtcgccttttgtttgtattctcattttcaccgatctttgttcgtcttgagcagagatctggt 11439668  T
Q  162 ttttaaataaaatttg 177  Q
    | || |||||||||||    
T  11439667 tgtttaataaaatttg 11439652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 26602550 - 26602457
Alignment:
Q  82 ggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 177  Q
    ||||||||  |||||||| |||| ||| | |||| ||||| |||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||    
T  26602550 ggtgttccgtctatatacaacactttttgtttgttttctccgaatcaccggtctctgttggtcttgagcag-gatcgggttttt-aataaaatttg 26602457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 46603691 - 46603809
Alignment:
Q  59 gtcttttatggtgttt-attttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatc 157  Q
    |||||||||| ||||| ||||||||||||||| ||||||||| ||   ||| | ||||||| |||||| ||||||||| | ||||||||||| || ||||    
T  46603691 gtcttttatgatgttttattttcgggtgttccgcctatatacaacgtcttttgtttgtattatctgaaccaccggtctttattcgtcttgagtagggatc 46603790  T
Q  158 tggtttttaaataaaatttg 177  Q
    |  ||||| |||||||||||    
T  46603791 tcattttt-aataaaatttg 46603809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 376547 - 376463
Alignment:
Q  68 ggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcag 152  Q
    ||||||||||||| |||||||  |||||||||| | | ||||  ||||||||||||  ||| | |||||||||||||||||||||    
T  376547 ggtgtttattttcaggtgttctgcctatatacggcgcctttactttgtattctctgtttcatccgtctctgttcgtcttgagcag 376463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 9557241 - 9557357
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgtt-cgtcttgagcagcgatctgg 160  Q
    ||||| |||||||||||||||||||| |   |||||||||    |||   |||||||||| || ||||||||||||||| |||||||||||| |||||||    
T  9557241 ttttaaggtgtttattttcgggtgtttcgtttatatacgatgttttttatttgtattctcagattcaccggtctctgtttcgtcttgagcagagatctgg 9557340  T
Q  161 tttttaaataaaatttg 177  Q
    || || || ||||||||    
T  9557341 ttgtttaacaaaatttg 9557357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 10605082 - 10605145
Alignment:
Q  115 tattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 178  Q
    |||||||||  ||||| |||||| |||||||||||||| |||||| || |||||||||||||||    
T  10605082 tattctctgtttcaccagtctctattcgtcttgagcagggatctgattgttaaataaaatttgc 10605145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 52278617 - 52278714
Alignment:
Q  63 tttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtt 162  Q
    |||| ||||||||||||| |||||||| |||||||| | | |  |||| ||||||||||||  ||| | ||||||||||||||||||||| |||||||||    
T  52278617 tttaaggtgtttattttcaggtgttccgcctatatatggcgc-cttagcttgtattctctgtttca-cagtctctgttcgtcttgagcagggatctggtt 52278714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 7451958 - 7451892
Alignment:
Q  112 ttgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 178  Q
    |||||||||| |  ||||||||||||||||||||||||||| ||||| ||| || ||||| ||||||    
T  7451958 ttgtattctcagtttcaccggtctctgttcgtcttgagcagagatctagttgtttaataatatttgc 7451892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 10785214 - 10785093
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 155  Q
    ||||| ||||| ||||||||| || |||||||||  || | |||| |   ||||| |||||||||| |  | ||| |||||| |||||||||||||| ||    
T  10785214 ggtgttttttaaggtgtttatatttgggtgttccgactttgtacggcgtttttagtttgtattctcagttttacccgtctctattcgtcttgagcaggga 10785115  T
Q  156 tctggtttttaaataaaatttg 177  Q
    ||||||| |||||| |||||||    
T  10785114 tctggttgttaaatgaaatttg 10785093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 27431411 - 27431351
Alignment:
Q  122 tgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgccgtt 182  Q
    |||||||||| |||||||| ||||||||||| ||||| |||| || ||||||||| |||||    
T  27431411 tgaatcaccgatctctgttagtcttgagcagggatctcgtttgtagataaaattttccgtt 27431351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 16149106 - 16149148
Alignment:
Q  58 tgtcttttatggtgtttattttcgggtgttccacctatatacg 100  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||    
T  16149106 tgtcttttagggtgtttattttcgcgtgttccgcctatatacg 16149148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 16577585 - 16577643
Alignment:
Q  29 agggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgtt 87  Q
    ||||| || |||||| |||||| ||  ||||||||||||| ||||||||||||||||||    
T  16577585 agggtatgactagatgttgtgtgtaggggtgtcttttatgatgtttattttcgggtgtt 16577643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 72 - 185
Target Start/End: Original strand, 12296518 - 12296630
Alignment:
Q  72 tttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataa 171  Q
    |||||||| ||||||||  ||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| ||||||| ||||||||||    
T  12296518 tttatttttgggtgttctgcctgtatacgacacatttagtttgtattctctgaatcatcggtctctattcgttttgagcagagatctgg-ttttaaataa 12296616  T
Q  172 aatttgccgttaaa 185  Q
    ||||||| ||||||    
T  12296617 aatttgctgttaaa 12296630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 20632233 - 20632124
Alignment:
Q  74 tattttcgggtgttccacctatatacgacacattt-agattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaa 172  Q
    ||||||||||| |||| ||||||||| || | ||| || ||||||||||||||||||||||||| ||||||||| |||||  ||||| ||||||||||||    
T  20632233 tattttcgggtattccgcctatatacaacgccttttagtttgtattctctgaatcaccggtctcagttcgtcttaagcaggaatctgttttttaaataaa 20632134  T
Q  173 atttgccgtt 182  Q
    ||||||||||    
T  20632133 atttgccgtt 20632124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 57 - 178
Target Start/End: Complemental strand, 19814970 - 19814848
Alignment:
Q  57 gtgtcttttatggtgtttattttcgggtgttccacctatatacgacacattt-agattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 155  Q
    |||||||||||| |||||||||| ||||||||  | ||||||| || | ||| || ||||| ||||||  | | ||||||||||||||||||||||| ||    
T  19814970 gtgtcttttatgatgtttatttttgggtgttctgcttatatacaacgccttttagtttgtactctctgttttatcggtctctgttcgtcttgagcaggga 19814871  T
Q  156 tctggtttttaaataaaatttgc 178  Q
    ||||||| |||||||||||||||    
T  19814870 tctggttgttaaataaaatttgc 19814848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 46487581 - 46487694
Alignment:
Q  29 agggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatca 128  Q
    |||||||| |||| | |||||| ||  |||| | ||||| |||||||||||||| |||||| |||||||||||  | ||||| ||||||||||| |||||    
T  46487581 agggtttgtctaggtgttgtgtgtaggggtgccatttattgtgtttattttcggatgttccgcctatatacgatgcctttagtttgtattctctaaatca 46487680  T
Q  129 ccggtctctgttcg 142  Q
    ||||||||||||||    
T  46487681 ccggtctctgttcg 46487694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 28967209 - 28967324
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| ||||||||||||| |||||||| |||||||||  | | ||| | ||||||| ||||  |||||| ||||||||||||||||||||  ||||||     
T  28967209 ttttagggtgtttattttcaggtgttccgcctatatacagcgcctttcgtttgtattatctgtttcaccgatctctgttcgtcttgagcagaaatctgg- 28967307  T
Q  162 ttttaaataaaatttgc 178  Q
    |||||||||||||||||    
T  28967308 ttttaaataaaatttgc 28967324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 41117723 - 41117600
Alignment:
Q  54 atggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagc 153  Q
    |||||||  |||| |||||||||||||||||||||| |||||||||||  | | | | ||||| ||||    ||||| |||||||||||||||||||||     
T  41117723 atggtgttatttagggtgtttattttcgggtgttccgcctatatacgatgcctcttgtttgtagtctcaatttcacctgtctctgttcgtcttgagcaga 41117624  T
Q  154 gatctggtttttaaataaaatttg 177  Q
    ||||| ||| || |||||||||||    
T  41117623 gatctagttgtttaataaaatttg 41117600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 37347363 - 37347297
Alignment:
Q  111 attgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 177  Q
    |||||| ||||| |||||||  ||||||||| |||||||||| ||||||||||||||||||| ||||    
T  37347363 attgtagtctctaaatcaccaatctctgttcatcttgagcagtgatctggtttttaaataaattttg 37347297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 39420788 - 39420741
Alignment:
Q  57 gtgtcttttatggtgtttattttcgggtgttccacctatatacgacac 104  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||    
T  39420788 gtgttttttatggtgttcattttcgggtgttccgcctatatacgacac 39420741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 38930122 - 38930238
Alignment:
Q  62 ttttatggtgtttatttt-cgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg-ttcgtcttgagcagcgatctg 159  Q
    |||||||||||||||||| ||||||||||||||||||||| | | ||| | ||||| | | ||  ||||||||||||| || ||||||||||| | ||||    
T  38930122 ttttatggtgtttatttttcgggtgttccacctatatacggctcctttcgtttgtact-tatgtttcaccggtctctgttttgtcttgagcagagttctg 38930220  T
Q  160 gtttttaaataaaatttgc 178  Q
     ||||| ||||||||||||    
T  38930221 attttt-aataaaatttgc 38930238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 42719496 - 42719605
Alignment:
Q  68 ggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaa 167  Q
    ||||||||||||| ||| |||| | |||||||| |   ||| | |||||||||| |  |||||||||||| |||||||||||||| ||| || || || |    
T  42719496 ggtgtttattttcaggttttccgcttatatacggcgtcttttgtttgtattctcagtttcaccggtctctattcgtcttgagcagggatttgattgttta 42719595  T
Q  168 ataaaatttg 177  Q
    ||||||||||    
T  42719596 ataaaatttg 42719605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 13528739 - 13528803
Alignment:
Q  120 tctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgccgttaa 184  Q
    ||||||| |||||||||||||||||||| |||| |||  ||||||  ||||||||||||| ||||    
T  13528739 tctgaatgaccggtctctgttcgtcttgtgcagggattaggttttctaataaaatttgcctttaa 13528803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 21983553 - 21983506
Alignment:
Q  130 cggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 178  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  21983553 cggtctctgttcgtcttgagcagggatctgattttt-aataaaatttgc 21983506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 9262800 - 9262893
Alignment:
Q  85 gttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 178  Q
    |||||| ||||||||| | | ||| | |||||||||| |  ||| |||||| |||||||||||||| | ||| ||||| || ||||||||||||    
T  9262800 gttccaactatatacggcgccttttgtttgtattctcagtttcatcggtctttgttcgtcttgagcggggatttggttgtttaataaaatttgc 9262893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 771 - 631
Alignment:
Q  33 tttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccgg 132  Q
    ||||||||| | |||||| ||  | |||||||||||||||||||||||||||||||||| ||||||||||   ||||| |||||||||||||||||| |     
T  771 tttggctaggtgttgtgtgtagggatgtcttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctctgaatcacgga 672  T
Q  133 tctctgttcgtcttgagcagcgatctggtttttaaataaaa 173  Q
    ||| ||||||||||||||   ||||  ||||||||||||||    
T  671 tctttgttcgtcttgagctcggatcgagtttttaaataaaa 631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 3e-26; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 12197828 - 12197699
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 155  Q
    ||||||||||| |||||||||||||  ||||||| |||||| ||||| | ||||| ||||||||||||| |||||| ||||| |||||||||||||  ||    
T  12197828 ggtgtcttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgagcataga 12197729  T
Q  156 tctggtttttaaataaaatttgccgttaaa 185  Q
    ||| ||| ||||||||||||| | ||||||    
T  12197728 tctcgttgttaaataaaatttactgttaaa 12197699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 12442256 - 12442127
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 155  Q
    ||||||||||| |||||||||||||  ||||||| |||||| ||||| | ||||| ||||||||||||| |||||| ||||| |||||||||||||  ||    
T  12442256 ggtgtcttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgagcataga 12442157  T
Q  156 tctggtttttaaataaaatttgccgttaaa 185  Q
    ||| ||| ||||||||||||| | ||||||    
T  12442156 tctcgttgttaaataaaatttactgttaaa 12442127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 25184900 - 25184754
Alignment:
Q  29 agggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatca 128  Q
    |||| |||||||| | |||||| ||  | |||||||||||||||||| || |||||||||||||||||||||||   ||||| ||||| |||||||||||    
T  25184900 agggcttggctaggtattgtgtgtatggatgtcttttatggtgtttactt-cgggtgttccacctatatacgacgtttttagtttgtactctctgaatca 25184802  T
Q  129 ccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 177  Q
    ||||||||| || |||||||| || ||| |||||||| |||||||||||    
T  25184801 ccggtctctttttgtcttgagtagggatttggttttt-aataaaatttg 25184754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 2613250 - 2613178
Alignment:
Q  106 tttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 178  Q
    ||||| ||||||||||||||| |||  ||| | ||||||||||| || |||||| || |||||||||||||||    
T  2613250 tttagtttgtattctctgaatgaccaatctatattcgtcttgagtagggatctgattgttaaataaaatttgc 2613178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 8843830 - 8843745
Alignment:
Q  91 cctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 178  Q
    |||||||||| | ||||| | ||||||| ||||  |||||||||||||||||||||||| || ||| || ||||| ||||||||||||    
T  8843830 cctatatacggcgcatttcgtttgtatt-tctgtttcaccggtctctgttcgtcttgagaagggatttgattttt-aataaaatttgc 8843745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 9831756 - 9831629
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattc-----tctgaatcaccggtctctgttcgtcttgagc 150  Q
    ||||| || ||||| ||||||||||||||| ||  ||||||||||||   ||||| ||||||||     ||||||||||||  |||| ||||| ||||||    
T  9831756 ggtgttttgtatggagtttattttcgggtggtcggcctatatacgacgtctttagtttgtattctctgctctgaatcaccgacctctattcgttttgagc 9831657  T
Q  151 agcgatctggtttt-taaataaaatttg 177  Q
    |  |||||| |||| |||||||||||||    
T  9831656 aaagatctgattttctaaataaaatttg 9831629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 22325772 - 22325734
Alignment:
Q  139 ttcgtcttgagcagcgatctggtttttaaataaaatttg 177  Q
    |||||||||||||||||||||||| || |||||||||||    
T  22325772 ttcgtcttgagcagcgatctggttatttaataaaatttg 22325734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 3e-26; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 31409736 - 31409591
Alignment:
Q  34 ttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgaca-catttagattgtattctctgaatcaccgg 132  Q
    |||||||| | |||||  || |||||||||| |||||||||||||||  |||||||||||||||||| || | ||||| ||||||| ||| ||||| | |    
T  31409736 ttggctaggtgttgtgggtagtggtgtctttaatggtgtttattttcatgtgttccacctatatacgccatcttttagcttgtattatcttaatcatcag 31409637  T
Q  133 tctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 178  Q
    ||||| || ||||||||||| ||||||||||||| |||||||||||    
T  31409636 tctctttttgtcttgagcagagatctggtttttagataaaatttgc 31409591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 9427822 - 9427715
Alignment:
Q  65 tatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttt 164  Q
    ||||| ||||||||| || | |||| ||||||||||   ||||||| ||||||||||| |||||||| |||||||||||||||||||  |||||||||||    
T  9427822 tatggagtttatttttggatattccgcctatatacgttgcatttagtttgtattctctaaatcaccgatctctgttcgtcttgagcaaggatctggtttt 9427723  T
Q  165 taaataaa 172  Q
    ||||||||    
T  9427722 taaataaa 9427715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 28534240 - 28534136
Alignment:
Q  73 ttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaa 172  Q
    ||||||||||||||||| |||||||||| | | |||   ||||||||||| ||||||||||||||||||||||||||||  ||| |||||||| ||||||    
T  28534240 ttattttcgggtgttccgcctatatacggcgccttttatttgtattctctaaatcaccggtctctgttcgtcttgagcaaagatttggttttt-aataaa 28534142  T
Q  173 atttgc 178  Q
    ||||||    
T  28534141 atttgc 28534136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 3478679 - 3478798
Alignment:
Q  58 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacattt-agattgtattctctgaatcaccggtctctgttcgtcttgagcagcgat 156  Q
    ||||||||| |||||||||||||||||||||| |||||||||| | | ||| || ||| | |||||   ||||||||||||||| ||||||| ||| |||    
T  3478679 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttcaggttgcactctctt--tcaccggtctctgtttgtcttgatcagggat 3478776  T
Q  157 ctggtttttaaataaaatttgc 178  Q
    |||||| |||||||||||||||    
T  3478777 ctggttgttaaataaaatttgc 3478798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 23983574 - 23983668
Alignment:
Q  58 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcag 152  Q
    ||||||||||| |||||||||| || || ||| |||||||||||  | ||||  |||||||||||||||||||| ||| ||||||| ||||||||    
T  23983574 tgtcttttatgatgtttatttttggatgctccgcctatatacgatgcctttaatttgtattctctgaatcaccgatctttgttcgttttgagcag 23983668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 42533006 - 42532892
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| ||||||||||| | |||||||| |||||||||| | | ||| | |||||||||| |   |||||||||||||||||||||||||| ||| ||||    
T  42533006 ttttagggtgtttatttccaggtgttccgcctatatacggcgccttttggttgtattctcagttccaccggtctctgttcgtcttgagcagggatttggt 42532907  T
Q  162 ttttaaataaaattt 176  Q
    | |  ||||||||||    
T  42532906 tgtctaataaaattt 42532892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 26385903 - 26385792
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    |||||||||||||||||| ||||||||| |||||||||| |   |||   ||||| | ||||||||| ||||||||||||||||||||||| ||||||      
T  26385903 ttttatggtgtttatttt-gggtgttccgcctatatacggcgtcttt---ttgtagtttctgaatcatcggtctctgttcgtcttgagcagggatctgac 26385808  T
Q  162 ttttaaataaaatttg 177  Q
    | ||||||||| ||||    
T  26385807 tattaaataaattttg 26385792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 47456770 - 47456706
Alignment:
Q  112 ttgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 177  Q
    ||||||| ||||  ||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  47456770 ttgtattttctgtttcaccggtctctgttcgtcttgagcagagatctggttttt-aataaaatttg 47456706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 6726147 - 6726051
Alignment:
Q  81 gggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttg 177  Q
    ||||||||| |||||||||| |   ||| | |||||||||| |  |||||| |||||||||||||||||||| ||||||||| || |||||||||||    
T  6726147 gggtgttccgcctatatacggcgttttttgtttgtattctcagtttcaccgatctctgttcgtcttgagcagagatctggttgtttaataaaatttg 6726051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 48058405 - 48058306
Alignment:
Q  76 ttttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatt 175  Q
    |||| ||||||||| |||||||| ||| | ||| | |||||||||||   ||||||||||||||| ||||||||||| ||| |||||||| |||||||||    
T  48058405 ttttagggtgttccgcctatatatgacgcctttcgtttgtattctctatttcaccggtctctgtttgtcttgagcagagatatggttttt-aataaaatt 48058307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 9107481 - 9107600
Alignment:
Q  58 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatc 157  Q
    |||||||||||||||| ||||| | | ||||| ||| |||||| | | |||   ||||||||| |||||||| | ||  |||||||||||||||| |||     
T  9107481 tgtcttttatggtgttcatttttgtgcgttccgcctttatacggcgcctttgatttgtattctttgaatcactgatcattgttcgtcttgagcagggatt 9107580  T
Q  158 tggtttttaaataaaatttg 177  Q
     |||||||||||||||||||    
T  9107581 aggtttttaaataaaatttg 9107600  T

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Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 13312180 - 13312287
Alignment:
Q  71 gtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaata 170  Q
    ||||||||||||||||||| ||||||||| |  | ||||| ||||||| |||||||||  | |||| ||||||||| ||| | ||||  ||| |||||||    
T  13312180 gtttattttcgggtgttccgcctatatacaaagcctttagtttgtattatctgaatcattgatctcagttcgtcttaagctgagatcgagttattaaata 13312279  T
Q  171 aaatttgc 178  Q
    ||||||||    
T  13312280 aaatttgc 13312287  T

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Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 16828839 - 16828752
Alignment:
Q  70 tgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatc 157  Q
    |||||||||||||||||||| |||||||||| | ||||| | |||||||||| |  |||||||||| |||| ||||||| ||| ||||    
T  16828839 tgtttattttcgggtgttccgcctatatacggcgcattttgtttgtattctcagtttcaccggtctttgtttgtcttgaacagagatc 16828752  T

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Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 40292757 - 40292642
Alignment:
Q  60 tcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctg 159  Q
    ||||||||||| |||| ||| || |||||| | |||||||| | | ||||  ||||| ||||| || ||||||||||||||||||||||| || ||||||    
T  40292757 tcttttatggtttttacttt-ggatgttccgcatatatacggcgcgtttaacttgtagtctctaaaacaccggtctctgttcgtcttgaggagggatctg 40292659  T
Q  160 gtttttaaataaaatttg 177  Q
     ||||| |||||||||||    
T  40292658 attttt-aataaaatttg 40292642  T

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Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 33719349 - 33719413
Alignment:
Q  112 ttgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaattt 176  Q
    |||||||||| |  |||||| |||||||||||||||||||| ||||||||| || ||||||||||    
T  33719349 ttgtattctcagtttcaccgatctctgttcgtcttgagcagggatctggttgtttaataaaattt 33719413  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 9657715 - 9657779
Alignment:
Q  120 tctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgccgttaa 184  Q
    ||||||| |||||||||||||||||||| |||| |||  ||||||  ||||||||||||| ||||    
T  9657715 tctgaatgaccggtctctgttcgtcttgtgcagggattaggttttctaataaaatttgcctttaa 9657779  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 6716483 - 6716368
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctggt 161  Q
    ||||| ||||||||||||| ||||||||   |||||||| | | ||||  ||||||||||||  ||| | ||||| ||| ||||||||||| ||  ||||    
T  6716483 ttttagggtgtttattttcaggtgttccggttatatacggcccctttaatttgtattctctgtttcatctgtctcggtttgtcttgagcagggacttggt 6716384  T
Q  162 ttttaaataaaatttg 177  Q
      ||||||||||||||    
T  6716383 ggttaaataaaatttg 6716368  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 185
Target Start/End: Original strand, 2359342 - 2359470
Alignment:
Q  60 tcttttatggtgtttattttcgggtgttccacctatatacgacacatt---tagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgat 156  Q
    ||||||||||||| |||||||| ||||| | |||||||||| |    |   ||| ||||||| |||||||||||  ||||||||||||||||||||  ||    
T  2359342 tcttttatggtgtatattttcgtgtgtttcgcctatatacggcggcgtctgtagtttgtattttctgaatcaccactctctgttcgtcttgagcagatat 2359441  T
Q  157 ctggtttttaaataaaatttgccgttaaa 185  Q
    |   | |||| ||||||||||| ||||||    
T  2359442 caaatctttatataaaatttgctgttaaa 2359470  T

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Target: scaffold0050 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 37035 - 37156
Alignment:
Q  56 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcga 155  Q
    ||||| ||||||||||||||||||||| |||||| |||||||||  |   ||| | ||||||| || |  ||||||||||||||||||||||||||| ||    
T  37035 ggtgttttttatggtgtttattttcggatgttccgcctatatacagcgtcttttgtttgtattatcagtttcaccggtctctgttcgtcttgagcaggga 37134  T
Q  156 tctggtttttaaataaaatttg 177  Q
    || |||| || |||||| ||||    
T  37135 tcaggttgtttaataaattttg 37156  T

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Target: scaffold0063 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 58462 - 58560
Alignment:
Q  62 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgttcgtcttgagcagcgatctgg 160  Q
    ||||| ||| |||||||| |||||||| ||||||||||| | | ||| | || |||| ||||  |||||||||||| |||||||||||||| |||||||    
T  58462 ttttagggtatttatttttgggtgttctacctatatacggcgccttttgtttctattatctgtttcaccggtctcttttcgtcttgagcagggatctgg 58560  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 426622 - 426559
Alignment:
Q  115 tattctctgaatcaccggtctctgttcgtcttgagcagcgatctggtttttaaataaaatttgc 178  Q
    |||| ||||||||||  ||||||| |||||||||| || |||||| ||||||||||||||||||    
T  426622 tattatctgaatcacatgtctctgatcgtcttgagtagggatctgatttttaaataaaatttgc 426559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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