View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1308_high_31 (Length: 424)

Name: NF1308_high_31
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1308_high_31
NF1308_high_31
[»] chr6 (23 HSPs)
chr6 (173-396)||(33263454-33263677)
chr6 (208-396)||(33401437-33401625)
chr6 (173-396)||(33286362-33286591)
chr6 (224-396)||(33305300-33305472)
chr6 (204-396)||(33388858-33389050)
chr6 (299-396)||(31561982-31562079)
chr6 (10-80)||(33263790-33263860)
chr6 (173-396)||(33359532-33359752)
chr6 (222-392)||(33643701-33643871)
chr6 (174-396)||(33272616-33272841)
chr6 (220-396)||(9167583-9167753)
chr6 (207-396)||(33058380-33058572)
chr6 (10-74)||(33401761-33401825)
chr6 (220-266)||(33410916-33410962)
chr6 (10-77)||(33286686-33286753)
chr6 (10-79)||(9167913-9167982)
chr6 (230-267)||(31561898-31561935)
chr6 (10-77)||(33058707-33058774)
chr6 (297-396)||(33410756-33410855)
chr6 (17-75)||(33389215-33389273)
chr6 (17-75)||(33643481-33643539)
chr6 (37-78)||(33411095-33411136)
chr6 (17-77)||(31561685-31561745)
[»] chr2 (1 HSPs)
chr2 (173-394)||(17439864-17440091)
[»] chr4 (8 HSPs)
chr4 (299-396)||(31503299-31503396)
chr4 (225-396)||(31478075-31478246)
chr4 (313-382)||(31033070-31033139)
chr4 (297-370)||(31498063-31498136)
chr4 (318-396)||(31149176-31149254)
chr4 (313-396)||(31527235-31527318)
chr4 (338-395)||(31158051-31158108)
chr4 (39-79)||(31497818-31497858)
[»] scaffold1408 (2 HSPs)
scaffold1408 (301-394)||(1447-1540)
scaffold1408 (230-269)||(1596-1635)
[»] scaffold0428 (3 HSPs)
scaffold0428 (301-394)||(7193-7286)
scaffold0428 (230-269)||(7342-7381)
scaffold0428 (17-74)||(7907-7964)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 173 - 396
Target Start/End: Complemental strand, 33263677 - 33263454
Alignment:
Q  173 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtac 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33263677 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtggacgttgaacaattgtcaaaaatgagtaatcttagattgctcatcatcaggtac 33263578  T
Q  273 ggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcacc 372  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33263577 ggaatgtatatctcaggaagcccaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcacc 33263478  T
Q  373 ccaatgaacttgtagaattgatct 396  Q
    ||||||||||||||||||||||||    
T  33263477 ccaatgaacttgtagaattgatct 33263454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 208 - 396
Target Start/End: Complemental strand, 33401625 - 33401437
Alignment:
Q  208 atgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttc 307  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| | |||||||||| || |     | ||||||||||| |||||| || ||||||    
T  33401625 atgaagaggtggatgttgaacacttatcaaaaatgagtaatcttagacttctcatcatcaagtgcaattggaatatctcaggaggctcaaattttctttc 33401526  T
Q  308 aaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 396  Q
    |||| |||| ||||||||||| ||| ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33401525 aaacgaattaagatatgttgattggcatgaatatcctttcaagtatttgccaacaagttttcaccccaatgaacttgtagaattgatct 33401437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 173 - 396
Target Start/End: Complemental strand, 33286591 - 33286362
Alignment:
Q  173 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtgg------acgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 266  Q
    |||||||||||| ||||||||| |||||||| ||||||||||||| |      | |||||||||||||||||||||||||||||||||||||||||||||    
T  33286591 ttaggaaaagcatgttaaagccttagttttgaatgatgaagaggttggattgaatgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 33286492  T
Q  267 aggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagtt 366  Q
    | ||  ||  || ||||||| ||||||  |    |||||||||||||||| ||||||||| |||||  || ||||||||  || ||||||||||||| ||    
T  33286491 atgtggggtgtgaatatctccggaagcctattgagtctttcaaacaaattaagatatgttcagtggactggatatcctttcaaatatttgccatcaaatt 33286392  T
Q  367 ttcaccccaatgaacttgtagaattgatct 396  Q
    ||||||||||||||||||||||||||||||    
T  33286391 ttcaccccaatgaacttgtagaattgatct 33286362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 224 - 396
Target Start/End: Complemental strand, 33305472 - 33305300
Alignment:
Q  224 tgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatat 323  Q
    ||||||| |||||||||||| |||||||||||| |||||| ||| ||||||   ||  |||||||||||  || |  || ||||||||||||| | ||||    
T  33305472 tgaacacgtgtcaaaaatgaataatcttagattcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaattaaaatat 33305373  T
Q  324 gttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 396  Q
    ||||| ||| ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33305372 gttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatct 33305300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 204 - 396
Target Start/End: Complemental strand, 33389050 - 33388858
Alignment:
Q  204 gatgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtc 303  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||  ||   | ||||| || | ||| ||    |||    
T  33389050 gatgttgaagaggtggacgttgaacagttgtcaaaaatgagtaatcttagattactcatcatcaagtggggtccgaatatcccaagtagcccatcgagtc 33388951  T
Q  304 tttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 396  Q
    ||||||||| ||| ||||||||||||||| || | |||||||  |||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  33388950 tttcaaacacattaagatatgttgagtggaattattatcctttcaagtatttgccatcaagttttcaccccagtgatcttgtagagttgatct 33388858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 299 - 396
Target Start/End: Original strand, 31561982 - 31562079
Alignment:
Q  299 ttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 396  Q
    ||||||||| |||||||| |||||||||||||||  |||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31561982 ttgtctttcgaacaaattaagatatgttgagtggcttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatct 31562079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 33263860 - 33263790
Alignment:
Q  10 aagaatatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagc 80  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33263860 aagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagc 33263790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 396
Target Start/End: Complemental strand, 33359752 - 33359532
Alignment:
Q  173 ttaggaaaagcaagttaaagccatagttttggatgatgaaga---ggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcagg 269  Q
    ||||||||| || ||| ||||||||||||||  | ||||| |   ||||||| |||||||||||||||||||||||||||||||| ||||||||||||      
T  33359752 ttaggaaaaacatgttgaagccatagttttgattcatgaaaagatggtggactttgaacacttgtcaaaaatgagtaatcttagagtgctcatcatca-- 33359655  T
Q  270 tacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttc 369  Q
     | | |   ||||||||| ||||| |||   |||||||||||  ||| |||| | || ||||||| | ||||||||   ||||||||||| ||||||||     
T  33359654 -atgca---tatatctcaagaagcccaacgagtctttcaaacgcattaagatttattcagtgggaggcatatccttgccagtatttgccaacaagtttta 33359559  T
Q  370 accccaatgaacttgtagaattgatct 396  Q
    || ||||||||||||||||||||||||    
T  33359558 actccaatgaacttgtagaattgatct 33359532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 222 - 392
Target Start/End: Original strand, 33643701 - 33643871
Alignment:
Q  222 gttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagat 321  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| | || |||   | |||||| || |||| ||||||||||||||||  |||| ||||    
T  33643701 gttgaatacttgtcaaaaatgagtaatcttagattgctgatcataaagtgcggttggcatatcttagaaagcccaagttgtctttcaaaggaattaagat 33643800  T
Q  322 atgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattg 392  Q
    ||||||| ||| ||   |||||||  | || ||||||||||| |||||| |||||| ||||||||||||||    
T  33643801 atgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattg 33643871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 174 - 396
Target Start/End: Complemental strand, 33272841 - 33272616
Alignment:
Q  174 taggaaaagcaagttaaagccatagt--tttgga-tgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggt 270  Q
    ||||||||||| ||| |||||||||   |||||| | ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |||| ||    
T  33272841 taggaaaagcatgttgaagccatagaactttggagttatgaagaagtggtcgttgaacacttggcaaaaatgagtaatcttagattgctcataatcaagt 33272742  T
Q  271 acggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttca 370  Q
     |||   | ||||| |||| ||   |    | ||||||||   ||| ||||||||||||||||||| ||||||||  |||| | | ||| ||||||||||    
T  33272741 gcggtcggaatatcccaggtagtctatcgagcctttcaaatgcattaagatatgttgagtgggatggatatcctttcaagtgtctaccaacaagttttca 33272642  T
Q  371 ccccaatgaacttgtagaattgatct 396  Q
    ||||||||| ||| ||||||||||||    
T  33272641 ccccaatgaccttatagaattgatct 33272616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 220 - 396
Target Start/End: Complemental strand, 9167753 - 9167583
Alignment:
Q  220 acgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgag 319  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  |||||   | |||||| |       || || ||||||| ||| |||| ||    
T  9167753 acgttgaacacttgtcaaaaatgagtagtcttagattgctcatcatcaaatacggttggaatatcttac------catgtagtctttcgaacgaattaag 9167660  T
Q  320 atatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 396  Q
    |||| |||||||| ||  ||||||||  |||||||||||||| ||||||||| |||||||||||||| || ||||||    
T  9167659 atatcttgagtggtatcgatatcctttcaagtatttgccatcgagttttcacgccaatgaacttgtacaactgatct 9167583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 396
Target Start/End: Complemental strand, 33058572 - 33058380
Alignment:
Q  207 gatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtata---tctcaggaagctcaagttgtc 303  Q
    |||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||    ||   || |  |   | | ||||  | |||| ||||    
T  33058572 gatgaagaggcggactttgaacacttgtcaaaaatgagtaatctcagattgctcttcatcgccaactatatttcaacgatgttaggattcccaagctgtc 33058473  T
Q  304 tttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 396  Q
    |||| |||||||| |||| |||| | |||  |  ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33058472 tttcgaacaaattaagatttgttcactggtttagatatccttccaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatct 33058380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 33401825 - 33401761
Alignment:
Q  10 aagaatatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaa 74  Q
    ||||| |||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  33401825 aagaaaatggagcaggttgtggtctgcaaaacaactctacgatgttaagatggagaatatggtaa 33401761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 33410962 - 33410916
Alignment:
Q  220 acgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 266  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  33410962 acgttgaacacttttcaaaaatgagtaatcttagattgctcatcatc 33410916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 33286753 - 33286686
Alignment:
Q  10 aagaatatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 77  Q
    ||||| |||||| |||||||||||| || ||||| |||||||||||| | ||||||||||||||||||    
T  33286753 aagaaaatggagcaggttgtggtccacagaacaactctacaatgttatgttggagaatatggtaaagt 33286686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 9167982 - 9167913
Alignment:
Q  10 aagaatatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtag 79  Q
    ||||| |||||| ||||||||||||  ||||||| |||||||||||  |||||||| |||||||||||||    
T  9167982 aagaaaatggagcaggttgtggtccaaaaaacaactctacaatgttgcgatggagagtatggtaaagtag 9167913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 31561898 - 31561935
Alignment:
Q  230 cttgtcaaaaatgagtaatcttagattgctcatcatca 267  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31561898 cttgtcaaaaatgagtaatcttagattgctcatcatca 31561935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 33058774 - 33058707
Alignment:
Q  10 aagaatatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 77  Q
    ||||| |||||| |||||||||||| || ||||| ||||| |||||| | ||||||||||||||||||    
T  33058774 aagaaaatggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagt 33058707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 396
Target Start/End: Complemental strand, 33410855 - 33410756
Alignment:
Q  297 agttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 396  Q
    |||||||||||||||||||| || ||| |||| |||||  | |||||||    | | ||||||| |||||||||||| ||||||||||| ||||||||||    
T  33410855 agttgtctttcaaacaaattaaggtattttgactgggagcattatcctttctgggaattgccattaagttttcaccctaatgaacttgttgaattgatct 33410756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 33389273 - 33389215
Alignment:
Q  17 tggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaa 75  Q
    ||||| ||| ||||||||  ||||||| |||||||||||| ||||||||| ||||||||    
T  33389273 tggagcagggtgtggtcccaaaaacaactctacaatgttacgatggagaaaatggtaaa 33389215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 33643481 - 33643539
Alignment:
Q  17 tggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaa 75  Q
    ||||| ||| ||||||||  ||||||| |||||||||||  ||||||||||||||||||    
T  33643481 tggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 33643539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 33411136 - 33411095
Alignment:
Q  37 aaaacaattctacaatgttaagatggagaatatggtaaagta 78  Q
    ||||||| ||||||| |||| |||||||||||||||||||||    
T  33411136 aaaacaactctacaacgttatgatggagaatatggtaaagta 33411095  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 31561685 - 31561745
Alignment:
Q  17 tggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 77  Q
    ||||| ||||||||||||    ||||| |||||||||||| ||||||||| ||||||||||    
T  31561685 tggagcaggttgtggtcccatgaacaaatctacaatgttatgatggagaaaatggtaaagt 31561745  T

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Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 173 - 394
Target Start/End: Original strand, 17439864 - 17440091
Alignment:
Q  173 ttaggaaaagcaagttaaagccatagttttggatgat---gaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcagg 269  Q
    |||||||||||| ||| |||||||||||||| |  ||   ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||       
T  17439864 ttaggaaaagcatgttgaagccatagttttgaaatatactgaagaggtggacgctgaacatttgtcaaaaatgagtaatcttagattgctcatcatcgtc 17439963  T
Q  270 tacggaa-tgta--tatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagtt 366  Q
     ||   | || |  ||||||||||  | ||||||||||||| |||||||| |||||||||||||||  | |||||||||  |||||||||||| ||||||    
T  17439964 aaccatactgcaactatctcaggattcccaagttgtctttcgaacaaattaagatatgttgagtggcctaaatatcctttcaagtatttgccaacaagtt 17440063  T
Q  367 ttcaccccaatgaacttgtagaattgat 394  Q
    |||||||||||||||| |||||||||||    
T  17440064 ttcaccccaatgaactagtagaattgat 17440091  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 396
Target Start/End: Original strand, 31503299 - 31503396
Alignment:
Q  299 ttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 396  Q
    ||||||||| ||| |||| ||||||||||| |||  |||||||||||  ||||||||||| ||||||||||| || ||| ||||||| || |||||||    
T  31503299 ttgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccgtcaagttttcagccaaatcaacttgttgagttgatct 31503396  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 396
Target Start/End: Original strand, 31478075 - 31478246
Alignment:
Q  225 gaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatg 324  Q
    ||||||||||| ||||||||  ||||||||||||||||| ||||||      || | | |||||||| |   |||||| |||| ||  || | |||||||    
T  31478075 gaacacttgtctaaaatgagacatcttagattgctcatcgtcaggtgtcctgtgaacacctcaggaaaccttagttgtttttctaaagaactaagatatg 31478174  T
Q  325 ttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 396  Q
    ||||||||  |||||||||||  |||||||||||||| |||||| || | ||| ||||||| ||||||||||    
T  31478175 ttgagtggagtgaatatcctttcaagtatttgccatcgagttttgactctaatcaacttgttgaattgatct 31478246  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 382
Target Start/End: Complemental strand, 31033139 - 31033070
Alignment:
Q  313 aattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaact 382  Q
    ||||||||||||||||||||  |||||||||||  | |||||||||  ||||||||||||||||| ||||    
T  31033139 aattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcaccccaatcaact 31033070  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 31498063 - 31498136
Alignment:
Q  297 agttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttca 370  Q
    ||||||||||| |||||||| |||||| |||||||| ||||||||||||  | |||||| ||||||| ||||||    
T  31498063 agttgtctttccaacaaattaagatattttgagtggcatgaatatcctttcatgtatttaccatcaaattttca 31498136  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 396
Target Start/End: Complemental strand, 31149254 - 31149176
Alignment:
Q  318 agatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 396  Q
    |||||||| |||||| ||  ||||||||  ||||||||||||||||||||||  || ||| ||||||| ||||||||||    
T  31149254 agatatgtcgagtggaatagatatcctttcaagtatttgccatcaagttttctgcctaatcaacttgtcgaattgatct 31149176  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 396
Target Start/End: Complemental strand, 31527318 - 31527235
Alignment:
Q  313 aattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatct 396  Q
    |||| |||||||||||||||   ||||||||||  | ||||||||||||||||||||| ||| |  ||||||| || |||||||    
T  31527318 aattaagatatgttgagtggcgggaatatcctttcatgtatttgccatcaagttttcaaccctaccaacttgttgagttgatct 31527235  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 31158108 - 31158051
Alignment:
Q  338 atatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatc 395  Q
    ||||||||  |||||||||||| || ||||||| |||||| ||||||| |||||||||    
T  31158108 atatcctttcaagtatttgccagcatgttttcagcccaatcaacttgttgaattgatc 31158051  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 31497818 - 31497858
Alignment:
Q  39 aacaattctacaatgttaagatggagaatatggtaaagtag 79  Q
    ||||||||||| |||||| | ||||||||||||||||||||    
T  31497818 aacaattctacgatgttatgttggagaatatggtaaagtag 31497858  T

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Target: scaffold1408 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 394
Target Start/End: Complemental strand, 1540 - 1447
Alignment:
Q  301 gtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgat 394  Q
    |||| |||||||||||  |||||||| | |||  || ||||||||  |||||| |||||||||||||||||||   ||||||||||||||||||    
T  1540 gtctatcaaacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgat 1447  T

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Target: scaffold1408; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 1635 - 1596
Alignment:
Q  230 cttgtcaaaaatgagtaatcttagattgctcatcatcagg 269  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  1635 cttgtcaacaatgagtaatcttagattgctaatcatcagg 1596  T

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Target: scaffold0428 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 394
Target Start/End: Complemental strand, 7286 - 7193
Alignment:
Q  301 gtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgat 394  Q
    |||| |||||||||||  |||||||| | |||  || ||||||||  |||||| |||||||||||||||||||   ||||||||||||||||||    
T  7286 gtctatcaaacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgat 7193  T

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Target: scaffold0428; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 7381 - 7342
Alignment:
Q  230 cttgtcaaaaatgagtaatcttagattgctcatcatcagg 269  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  7381 cttgtcaacaatgagtaatcttagattgctaatcatcagg 7342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 7964 - 7907
Alignment:
Q  17 tggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaa 74  Q
    ||||| ||| ||||||||  | ||||| |||||||||||| |||||||||||||||||    
T  7964 tggagcaggatgtggtccaaacaacaactctacaatgttacgatggagaatatggtaa 7907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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