View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_high_34 (Length: 409)
Name: NF1308_high_34
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_34 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 96 - 293
Target Start/End: Original strand, 20538 - 20735
Alignment:
| Q |
96 |
gtcttcactcgtagaactaaaaccacttttacttgctttcctcttcgacgatccactactaccctcgtcttcactctcatactcttcaagtaaaaactcc |
195 |
Q |
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| T |
20538 |
gtcttcactcgtagaactaaaaccacttttacttgctttcctcttcgacgctccactactaccctcgtcttcactctcatactcttcaagtaaaaactcc |
20637 |
T |
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| Q |
196 |
tcttcattatcacccacttcatcaattttcttcttcaaattcccattcttattacttttttcataatcattatcagattttcctaacagagacacaaa |
293 |
Q |
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| T |
20638 |
tcttcattatcacccacttcatcaattttcttcttcaaattcccactcttattacttttttcataatcattatcaaattttcctaacacagacacaaa |
20735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 329 - 405
Target Start/End: Original strand, 20771 - 20847
Alignment:
| Q |
329 |
gatgattattgttgacaacaaaatctctcatccaatcaggttcatcatctgaaccttgattctcattcatctcactc |
405 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
20771 |
gatgattattgttgaccacaaaatctctcatccaatcaggttcatcatctgaaccttgattctcattcttcccactc |
20847 |
T |
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