View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_high_36 (Length: 400)
Name: NF1308_high_36
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 83 - 371
Target Start/End: Complemental strand, 6365731 - 6365443
Alignment:
| Q |
83 |
ttatttatgtaatgagccagcttatattacccatcttcatttaaacgtgttgttatttagtaaattaattatgtaaaaaacatataataatgaacaataa |
182 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6365731 |
ttatttatgtaatgtgccagcttatattacccatcttcatttaaatgtgttgttatttagtaaattaattatgtaaaaaacatataataatgaacaataa |
6365632 |
T |
|
| Q |
183 |
acaattatttcttttgaactaaccttgcacctatcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaag |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6365631 |
acaattatttcttttgaactaaccttgcacctatcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaag |
6365532 |
T |
|
| Q |
283 |
atagtgtaatacatttaagcattaaagatgagttcattggtgaaaggtctctttgataagcaccaaaaggtgaagggaactgtggtgtt |
371 |
Q |
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| T |
6365531 |
atagtgtaatacatttaagcattaaagatgagttcattggtgaaaggtctctttgataagcaccaaaaggtgaagggaactgtggtgtt |
6365443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 215 - 321
Target Start/End: Complemental strand, 6393178 - 6393072
Alignment:
| Q |
215 |
atcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacatttaagcattaaagatgag |
314 |
Q |
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||||| || ||||||||| |||||||||| |||| |||| |||||| | ||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
6393178 |
atcaagtagtataaataccaagcatccccatggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaagcatcaaagatgac |
6393079 |
T |
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| Q |
315 |
ttcattg |
321 |
Q |
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||||||| |
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| T |
6393078 |
ttcattg |
6393072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 215 - 321
Target Start/End: Complemental strand, 6412319 - 6412212
Alignment:
| Q |
215 |
atcaactactataaatactaagcatccc-cttggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacatttaagcattaaagatga |
313 |
Q |
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||||| |||||||||||||||||||||| | ||| |||| |||||| | ||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
6412319 |
atcaagtactataaatactaagcatcccacaaggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaagcatcaaagatga |
6412220 |
T |
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| Q |
314 |
gttcattg |
321 |
Q |
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||||||| |
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| T |
6412219 |
cttcattg |
6412212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 6373263 - 6373157
Alignment:
| Q |
215 |
atcaactactataaatactaagcatcccct-tggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacatttaagcattaaagatga |
313 |
Q |
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||||| ||||||||||| ||||||||||| |||| |||| |||||| | |||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
6373263 |
atcaagtactataaatagtaagcatccccaatggttacaagacacaaacatttctttcatttgacaaagatagtgtaatacatttaagcatcaaagatga |
6373164 |
T |
|
| Q |
314 |
gttcatt |
320 |
Q |
| |
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|||||| |
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|
| T |
6373163 |
cttcatt |
6373157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 6356169 - 6356084
Alignment:
| Q |
215 |
atcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacatttaa |
300 |
Q |
| |
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||||||||||||||||||||| || ||| |||| |||| |||||||| |||||||||||||||| | |||||||||||||||||| |
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| T |
6356169 |
atcaactactataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccatatatagtgtaatacatttaa |
6356084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 371
Target Start/End: Complemental strand, 7463269 - 7463110
Alignment:
| Q |
216 |
tcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacattt-aagca---ttaaagat |
311 |
Q |
| |
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|||||||||||| |||||||||| |||| |||| |||| ||||| || |||||||||||||||||| ||||||||||| |||| ||||| | |||||| |
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| T |
7463269 |
tcaactactatagatactaagcacccccatggttacaagacacaggcatttctttcatttaccaaatatagtgtaatatatttaaagcatattcaaagat |
7463170 |
T |
|
| Q |
312 |
gagttcattggtgaaaggtctctttgataagcaccaaaaggtgaagggaactgtggtgtt |
371 |
Q |
| |
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| |||| ||| | ||||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
7463169 |
gttttcaggggtaactggtctctttgatagaggccaaaagttgaagggaactgtggtgtt |
7463110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 6373656 - 6373607
Alignment:
| Q |
255 |
acacaagcttttctttcatttaccaaagatagtgtaatacatttaagcat |
304 |
Q |
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|||||||||||||||||||| ||||||||| |||||||| ||||||||| |
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| T |
6373656 |
acacaagcttttctttcattagccaaagatattgtaatacgtttaagcat |
6373607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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