View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_high_39 (Length: 394)
Name: NF1308_high_39
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 76 - 354
Target Start/End: Original strand, 7223058 - 7223333
Alignment:
| Q |
76 |
aaataaaatccgaactccggtcagccaatgctgtgtaatcgtccaataacnnnnnnnccatcaacctgccctgtcatacaactaatttcaaaatggaaac |
175 |
Q |
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| T |
7223058 |
aaataaaatccgaactccggtcagccaatgcattgtaatcgtccaataacaaaaaaaccatcaacctgccctgtcatacaactaatttcaaaatggaaac |
7223157 |
T |
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| Q |
176 |
tatggcgcgtgaaactcgattcacatacctctatgatctaggatgttttttagtatcttcttcatctaacatagtacctatctattttgtcttttatttg |
275 |
Q |
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| T |
7223158 |
tat--cgcgtgaaactcgattcacatacctctatgatctaggatgtttt-tagtatcttcttcatctaacatagtacctatctattttgtcttttatttg |
7223254 |
T |
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| Q |
276 |
tatatatataatcataataactcgtcaatgttcagatcaaatatttggattcttgtttgaggacttataatatgcagtg |
354 |
Q |
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| T |
7223255 |
tatatatataatcataataactcgtcaatgttcagatcaagtatttggattcttgtttgaggccttataatatgcagtg |
7223333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7222988 - 7223037
Alignment:
| Q |
1 |
tcatcctccacaacactactgtacgtttgatgaagttgacttactataacacca |
54 |
Q |
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| T |
7222988 |
tcatcctccacaacactactgt----ttgatgaagttgacttgctataacacca |
7223037 |
T |
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