View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1308_high_4 (Length: 807)

Name: NF1308_high_4
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1308_high_4
NF1308_high_4
[»] scaffold0334 (1 HSPs)
scaffold0334 (56-777)||(5561-6297)


Alignment Details
Target: scaffold0334 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 56 - 777
Target Start/End: Complemental strand, 6297 - 5561
Alignment:
Q  56 cataggacaacttttattaatcaatcaatattcacgacaaaacaatcaattctaatgaggcaaatttattctgatacaaagtcaaagactaacaatgagg 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6297 cataggacaacttttattaatcaatcaatattcacgacaaaacaatcaattctaatgaggcaaatttattctgatacaaagtcaaagactaacaatgagg 6198  T
Q  156 ccacccaatatgtatatcaaatagtactaaagtcaagcaaacacatcaagccgaaattttaaataaccatgtataccgaaaataactatacaaaaatagc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6197 ccacccaatatgtatatcaaatagtactaaagtcaagcaaacacatcaagccgaaattttaaataaccatgtataccgaaaataactatacaaaaatagc 6098  T
Q  256 aacactttccccaaaagctaaagtctagaccaataagttcatgataaccgcaatgagaacagggaacgtagcaacgagagtagcagctgagcctggtgat 355  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6097 aacacttcccccaaaagctaaagtctagaccaataagttcatgataaccgcaatgagaacagggaacgtagcaacgagagtagtagctgagcctggtgat 5998  T
Q  356 ggaggagttgcatcgggcccagtgggagatgacggcgaaggtgttcctccgttggtaggtggagtaggagtagttcctgatgtaggaggagtagatg--- 452  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  5997 ggaggagttgcatcgggcccagtgggagatgacggtgaaggtgttcctccgttggtaggtggagtaggagtagttcctgatgtaggaggagtagatgtag 5898  T
Q  453 ------------taggtggtgtaggagaaggaggagaaggtgtggaagctgagactttaacgcttagcttttggtcaccggaacaatggccttgaatggt 540  Q
                ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  5897 gaggagtagatgtaggtggagtaggagaaggaggtgaaggtgtggaagctgagactttaacgcttagcttttggccactggaacaatggccttgaatggt 5798  T
Q  541 acatataaaatagaaatcaccagttctgttaagagtaactcttgctggtcctgttcttatgactaggccattttgattgatgttgcaattgtcaaaatct 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5797 acatataaaatagaaatcaccagttctgttaagagtaactcttgctggtcctgttgttatgactaggccattttgattgatgttgcaattgtcaaaatct 5698  T
Q  641 gccttgcttacttcagcaacagtgtggcctccggcaaaattgaaaactgaaattggacggcacaatnnnnnnntgggactgttaaaataaggaaaataat 740  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  5697 gccttgcttacttcagcaacagtgtggcctccggcaaaattgaaaactgaaattggacggcacaataaaaaaatgggactgttaaaataaggaaaataat 5598  T
Q  741 ttatacacactatctcttttacatcttgaaaatatgg 777  Q
    |||||||||||||||||||||||| ||||||||||||    
T  5597 ttatacacactatctcttttacattttgaaaatatgg 5561  T

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