View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_high_40 (Length: 390)
Name: NF1308_high_40
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 27296705 - 27296340
Alignment:
| Q |
1 |
cgtgtcatgtcaatattagacactgacacatgtcgggcaccatacacgcctatttttccgtagaaattttgttgttcacattaagctaatcattta-acc |
99 |
Q |
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| T |
27296705 |
cgtgtcatgtcaatattagacagtgacacatgtcgggcaccatacacgcctatttttccatagaaattttgttgttcacattaagctaatcatttatacc |
27296606 |
T |
|
| Q |
100 |
tttgcgattgtactagattgaaagttcactgggaggaaaaatgccaagcatcaaaccaactgtgagtaacattttaaacctttttcaacaccaaatttga |
199 |
Q |
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| T |
27296605 |
tttgcgattgtactagattgaaagttcactgggaggaaaaatgccaagcatcaaaccaactgtgagtaacattttaaacctttttcaacaccaaatttga |
27296506 |
T |
|
| Q |
200 |
tttatgttaaggagatttaggaacataatgaagctaatacatgtttctgtaacaggcaataaggttctatggaagtattaatccaacagtcacaggcata |
299 |
Q |
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| T |
27296505 |
tttatgttaaggagatttaggaacataatgaagctaatacatgtttctgt-acaggctataaggttctatggaagtattaatccaacagtcacaggcata |
27296407 |
T |
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| Q |
300 |
acaattcaaaatagtccacaatgccatctcaagtttgacaactgtaatggagtcttggtccatgatg |
366 |
Q |
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| T |
27296406 |
acaattcaaaatagtccacaatgccatctcaagtttgacaactgtaatggagtcttggtccatgatg |
27296340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 366
Target Start/End: Original strand, 14737638 - 14737723
Alignment:
| Q |
281 |
tccaacagtcacaggcataacaattcaaaatagtccacaatgccatctcaagtttgacaactgtaatggagtcttggtccatgatg |
366 |
Q |
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|||||| ||||| || ||||||||||| |||||||| || || ||||| ||||||||||| || ||||| ||| | || ||||||| |
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| T |
14737638 |
tccaactgtcacgggtataacaattcagaatagtcctcagtgtcatctaaagtttgacaattgcaatggggtccttgttcatgatg |
14737723 |
T |
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