View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_high_45 (Length: 369)
Name: NF1308_high_45
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_45 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 41847270 - 41847624
Alignment:
| Q |
1 |
gagcatgcaagcttccattggaaagataatcataaaccaaaagcttttcttccttagcataataataagctttaagtctaacaacattaggatgtctaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41847270 |
gagcatgcaagcttccattggaaagataatcataaaccaaaagcttttcttccttagcataataataagctttaagtctaacaacattaggatgtctaag |
41847369 |
T |
|
| Q |
101 |
cttccccacaacatccatatactgttcaaactgattcctatcacaaggattagcatccttaagtctcttaacagcaacagtacatccatcatcaagaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41847370 |
cttccccacaacatccatatactgttcaaactgattcctatcacaaggattagcatccttaagtctcttaacagcaacagtacatccatcatcaagaaca |
41847469 |
T |
|
| Q |
201 |
gctctataaacagttcccaaactacccttcccaagcatctctgcagaagctcgtagcaaatcctctaactcaaactcattccttctatcaaaaaacacta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41847470 |
gctctataaacagttcccaaactacccttcccaagcatctctgcagaagctcgtagcaaatcctctaactcaaactcattccttctatcaaaaaacacta |
41847569 |
T |
|
| Q |
301 |
atttgcttctatctgtttcagttgttgttccatcactatctctatccacaccccc |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41847570 |
atttgcttctatctgtttcagttgttgttccatcactatctctatccacaccccc |
41847624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 26889813 - 26889516
Alignment:
| Q |
1 |
gagcatgcaagcttccattggaaagataatcataaaccaaaagcttttcttccttagcataataataagctttaagtctaacaacattaggatgtctaag |
100 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| || | ||||||||||||||| ||||||||||||||| ||||| |||||| ||||| ||| |||| |
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| T |
26889813 |
gagcatgcaagctcccattggagagataatcatagacaagaagcttttcttccttggcataataataagctctaagtttaacaatgttagggtgtttaag |
26889714 |
T |
|
| Q |
101 |
cttccccacaacatccatatactgttcaaactgattcctatcacaaggattagcatccttaagtctcttaacagcaacagtacatccatcatcaagaaca |
200 |
Q |
| |
|
|||||| | |||||||||||||||||||| | || |||| |||||||||| ||||| ||||| ||||| |||||||| |||| ||||||||||| || |
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|
| T |
26889713 |
cttcccaatcacatccatatactgttcaaattcatgcctagcacaaggatttgcatctttaagcctcttgacagcaaccgtactaccatcatcaagcact |
26889614 |
T |
|
| Q |
201 |
gctctataaacagttcccaaactacccttcccaagcatctctgcagaagctcgtagcaaatcctctaactcaaactcattccttctatcaaaaaacac |
298 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||| ||||| || || | |||||| || |||||||| ||||||| |||||||||||||| |
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| T |
26889613 |
gccctataaacagttcccaaactacccttcccaagcatctcagcagatgcacgcaacaaatcttccaactcaaatccattcctcctatcaaaaaacac |
26889516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 49732962 - 49732861
Alignment:
| Q |
164 |
tctcttaacagcaacagtacatccatcatcaagaacagctctataaacagttcccaaactacccttcccaagcatctctgcagaagctcgtagcaaatcc |
263 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||||| ||||| ||||||| || | ||| ||||| | ||| || || ||||| |||| ||||||| |
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|
| T |
49732962 |
tctcttcacagcaacaacatttccatcatcaagaacagctttataagcagttccaaatccacctttccctaacatttcagctgaagcacgtaacaaatcc |
49732863 |
T |
|
| Q |
264 |
tc |
265 |
Q |
| |
|
|| |
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|
| T |
49732862 |
tc |
49732861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 22837728 - 22837638
Alignment:
| Q |
185 |
tccatcatcaagaacagctctataaacagttcccaaactacccttcccaagcatctctgcagaagctcgtagcaaatcctctaactcaaac |
275 |
Q |
| |
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||||||||||||||||||| |||| |||||||| || |||||||||| | ||| || || ||||| || ||||||||||||| ||||||| |
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| T |
22837728 |
tccatcatcaagaacagctttatagacagttcctaaggtacccttccccaacatttccgccgaagcacgaagcaaatcctctagctcaaac |
22837638 |
T |
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