View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1308_high_48 (Length: 342)
Name: NF1308_high_48
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_48 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0697 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 6316014 - 6316344
Alignment:
| Q |
12 |
acagatgttaaacagaaactcagaatcagttctgtccctattttcactactaaagaaagtagaaaaataaaaactcaagagcgatgttgtacctatgaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6316014 |
acagatgttaaacagaaactcagaatcagttctgtccctattttcactactaaagaaagtagaaaaataaaaactcaagagcgatgttgtacctatgaat |
6316113 |
T |
|
| Q |
112 |
tatatctcataattctctctttccaaaggtatgatgaaatcaattctttcttttccaagggcttttcttcggcaaagtgctttcctttatagaatttata |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6316114 |
tatatctcataattctctctttccaaaggtatggtgaaatcaattctttcttttccaagggcttttctttggcaaagtgctttcctttatagaatttata |
6316213 |
T |
|
| Q |
212 |
taatattgagttttccatttacacatataaccccattaaagatgaacaaaaacaaataggaaagagatgcaaacattcaaaatagacatatccggaacga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6316214 |
taatattgagttttccatttacacatataaccccattaaagatgaacaaaaacaaataggaaagagatgcaaacattcaaaatagacatatccggaacga |
6316313 |
T |
|
| Q |
312 |
caaaaatatcatcacaatactttgtgtaaag |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6316314 |
caaaaatatcatcacaatactttgtgtaaag |
6316344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 21532410 - 21532470
Alignment:
| Q |
8 |
caccacagatgttaaacagaaactcagaatcagttctgtccctattttcactactaaagaa |
68 |
Q |
| |
|
|||||| ||||||||||| | ||| ||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
21532410 |
caccactgatgttaaacatacacttagaatcagttctgtccccatcttcactattaaagaa |
21532470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 55323497 - 55323569
Alignment:
| Q |
12 |
acagatgttaaacagaaactcagaatcagttctgtccctattttcactactaaagaaagtagaaaaataaaaact |
86 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||| || || ||||||||||||||||||||||||||||| |
|
|
| T |
55323497 |
acagatgttaaacagaaactca--atcagttctgcccccatctttgctactaaagaaagtagaaaaataaaaact |
55323569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 3368 - 3428
Alignment:
| Q |
8 |
caccacagatgttaaacagaaactcagaatcagttctgtccctattttcactactaaagaa |
68 |
Q |
| |
|
|||||| ||||||||||| | ||| ||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
3368 |
caccactgatgttaaacatacacttagaatcagttctgtccccatcttcactattaaagaa |
3428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 10641585 - 10641525
Alignment:
| Q |
8 |
caccacagatgttaaacagaaactcagaatcagttctgtccctattttcactactaaagaa |
68 |
Q |
| |
|
|||||| ||||||| ||| ||||| ||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
10641585 |
caccactgatgttacacataaacttagaatcagttctgtccccatcttcactattaaagaa |
10641525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University