View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_high_51 (Length: 334)
Name: NF1308_high_51
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 53819969 - 53820297
Alignment:
| Q |
1 |
gatatgataactaccaatctaccatgagtaaaaaaattgataaaaagaatattgttatatatttttaatcaacnnnnnnnnnnnnngaacaaaactatct |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53819969 |
gatatgttaactaccaatctaccatgagtaaaaaaattgataaaaagaatattgttatatatttttaatcaacaaaaaaaaaaaa-gaacaaaactatct |
53820067 |
T |
|
| Q |
101 |
actgcgacaaggtaagagtattgagcagtagaaaacgtgaattgatcaaagccctgaaaactttgtcactaacactttcaataccacaaatattttcctc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53820068 |
actgcgacaaggtaagagtattgagcagtagaaaacgtgaattgatcaaagccctgaaaactttgtcactaacactttcaataccacaaatattttcctc |
53820167 |
T |
|
| Q |
201 |
taaatcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatattttcaacctcattcaaaaccttctgaatttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53820168 |
taaatcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatattttcaacctcattcaaaaccttctgaatttct |
53820267 |
T |
|
| Q |
301 |
tcaatcccttccaactccttcatctcactc |
330 |
Q |
| |
|
||||||||||| ||||||||| || ||||| |
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|
| T |
53820268 |
tcaatcccttctaactccttcttcacactc |
53820297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 32337290 - 32337189
Alignment:
| Q |
170 |
taacactttcaataccacaaatattttcctctaaatcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatatt |
269 |
Q |
| |
|
||||||||| |||||| || ||| ||| | | |||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
32337290 |
taacacttttaataccgcacatacattcttgtgaatctcgcatcctcttcaaaacc-atctcacttcttcatcttctttctttttcaaattcccaatatt |
32337192 |
T |
|
| Q |
270 |
ttc |
272 |
Q |
| |
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||| |
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|
| T |
32337191 |
ttc |
32337189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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