View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_high_54 (Length: 321)
Name: NF1308_high_54
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_54 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 43 - 267
Target Start/End: Complemental strand, 43797738 - 43797522
Alignment:
| Q |
43 |
aagcagcataacagtgatacacgaccatcgttctacatatatacaatgcattgcacaatatactctattgttttgaaagnnnnnnn-ctagttggtttcc |
141 |
Q |
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| T |
43797738 |
aagcagcataacagtgatacacgaccatcgttctacata----caatgcattgcacaatatactctattgttttgaaagaaaaaaaactagttggtttcc |
43797643 |
T |
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| Q |
142 |
aatattgatacatgccaaatgacattatatttttcctttattattttgatgaatctggccttctcctttcttgttgttcctatttttgtaaggatatcaa |
241 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43797642 |
aatattgatacatgccaaatgacatt-----tttcctttattattttgatgaatctggccttctcctttcttgttgttcctatttttgtaaggatatcaa |
43797548 |
T |
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| Q |
242 |
acaacaataataattccctcctctct |
267 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43797547 |
acaacaataataattccctcctctct |
43797522 |
T |
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