View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_high_55 (Length: 314)
Name: NF1308_high_55
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 307
Target Start/End: Complemental strand, 6127863 - 6127586
Alignment:
| Q |
30 |
cttgattctttacaatctcatcctttcttgatagattgatcacaccacactaaaacatattatgtaaattcaagggcttcaacctgcatctttttaacgt |
129 |
Q |
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| T |
6127863 |
cttgattctttccaatctcatcctttcttgatagattgatcacactacactaaaacatattatgtaaattcaagggcttcaacctgcatctttttaacgt |
6127764 |
T |
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| Q |
130 |
taata-aggtgttacaacaaaaattcgttcaatttttgtttcccattctgaataagtctctaaattatttcttccgtcaaaaggtggtacttttattttt |
228 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6127763 |
taatacaggtgttacaacaaaaattcgttccatttttgtttcccattctaaataagtctctgaattatttcttccgtcaaaaggtggtacttttattttt |
6127664 |
T |
|
| Q |
229 |
aaaccactcaatttgttccc-----gtctttcttctagttctctccttctcatccattactcgtcatcgctataatattgttgg |
307 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
6127663 |
aaaccactcaatttgttccccctaggtctttc------ttctctccttctcatccattactcctcatcgctataattttgttgg |
6127586 |
T |
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