View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_high_67 (Length: 266)
Name: NF1308_high_67
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_67 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 46817508 - 46817270
Alignment:
| Q |
1 |
aacttctcttgattctaccaaagtacaaattcctagtacacaattagacatggcaaattatgttgctttatgtcacctagctataatattggtcattaat |
100 |
Q |
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| T |
46817508 |
aacttctcttgattctacaaaagtacaaattcctagtacacaattagacatggcaaattctgttgctttatgtcacctagctataatattggtcattaat |
46817409 |
T |
|
| Q |
101 |
attgtcatggctggaccagccaatgcacaaatcaacaccccatgtaatccttctacaataagcactctcttcacaccttgtatgggttttcttacaggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46817408 |
attgtcatggctggaccagccaatgcacaaatcaacaccccatgtaatccttctacaataagcactctcttcacaccttgtatgggttttcttacaggta |
46817309 |
T |
|
| Q |
201 |
gtagtgctaatggcacctcaccaaccactgaatgttgtg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
46817308 |
gtagtgctaatggcacctcaccaaccactgaatgttgtg |
46817270 |
T |
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