View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_high_7 (Length: 543)
Name: NF1308_high_7
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 8 - 509
Target Start/End: Original strand, 7080728 - 7081229
Alignment:
| Q |
8 |
ccaagaatattcatcatacataggaaccaaccacattgtgctatgtcaccacccctgaaacatttcaactaaattccaagtcactcttgttagcttatgc |
107 |
Q |
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| T |
7080728 |
ccaacaatattcatcatacataggaaccaaccacattgtgctatgtcaccacccctgaaatatttcaactaaattctaagtcactcttgttagcttatgc |
7080827 |
T |
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| Q |
108 |
tctcaaatttttgaccttgattccctaacatcggagaatcttgcagttatacaaatcaagacggtccaaatttaaagctcgataaataaaaagatacgtt |
207 |
Q |
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| T |
7080828 |
tctcaaatttttgacattgattccctaacatcggagaatcttgcacttatacaaatcaagacggtccaaatttaaagcttgataaataaaaagatacgtt |
7080927 |
T |
|
| Q |
208 |
gtaaatctcgatcaaaatcagatgatcgagattttcatgcattgactactttgaagcatttttccgacgacttgggctaaacgtttgaaacacaacacta |
307 |
Q |
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| T |
7080928 |
gtaaatcttgatcaaaatcagatgatcgagattttcatgcattgactactttgaagcatttttccgacgacgtggggtaaacgtttgaaacacaacacta |
7081027 |
T |
|
| Q |
308 |
cctattgcaggaaactgatccatagcacaactcctacatttcaacccaagaggctccaatgcaccagtaacctttctccaaacctcattgttatactcac |
407 |
Q |
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| T |
7081028 |
cctattgcaggaaactgatccatagcacaactcctacatttcaacccaagaggctccaatgcaccagtaacctttctccaaacctcattgttatactcac |
7081127 |
T |
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| Q |
408 |
tacatgtcgttattgacaccgacattgtccctggtcggaaaatctgaacaaccttcctcaacatatgaacaatgttgtcatcattgtcgcttatggaccc |
507 |
Q |
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| T |
7081128 |
tacatgtcgttatcgacaccgacattgtccctggtcggaaaatctgaacaaccttcctcaacatatgaacaatgttgtcatcattgtcgcttatggaccc |
7081227 |
T |
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| Q |
508 |
ca |
509 |
Q |
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| T |
7081228 |
ca |
7081229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 486
Target Start/End: Complemental strand, 49020660 - 49020602
Alignment:
| Q |
428 |
gacattgtccctggtcggaaaatctgaacaaccttcctcaacatatgaacaatgttgtc |
486 |
Q |
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| T |
49020660 |
gacatagtacctggtcggaaaatctgaacaactttccttaacacatgtactatgttgtc |
49020602 |
T |
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