View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_high_70 (Length: 258)
Name: NF1308_high_70
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_70 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 17716922 - 17716695
Alignment:
| Q |
1 |
ttaaatgttagtttaaaacaaaataatagataatacattatgaaactctaattctaaagaacataatatcaaatatgcacatgctcaaaagcactccaat |
100 |
Q |
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| T |
17716922 |
ttaaatgttagtttaaaataaa-tgatagataatacattatgaaactctaattctaaagaacataatatcaaatatgcacatgctcaaaagcactccaat |
17716824 |
T |
|
| Q |
101 |
tcatctcacgtccgaatgagctactagtcaaaatcagtattttaatagcaaggagctgcaaatttggcgcttttgatccatacctcttccactactcggt |
200 |
Q |
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| T |
17716823 |
tcatctcacgttcgaatgagctacaagtcaaaatcattattttaatagcaaggagctgcagatttatcgcatttgatccatacctcttccaccactcagt |
17716724 |
T |
|
| Q |
201 |
tgtaatgcaattaaattatttgtagtaac |
229 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
17716723 |
tgtaatgcaattaaattatttgtaataac |
17716695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 2947956 - 2947813
Alignment:
| Q |
79 |
acatgctcaaaagcactccaattcatctcacgtccgaatgagctactagtcaaaatcagtattttaatagcaaggagctgcaaatttggcgcttttgatc |
178 |
Q |
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| T |
2947956 |
acatgctcaaaagtactccaattcctctcacgccccgatgagctacaagtcaaactcaatattttaatagcaagtagctgcaaatttgatgtttttgatc |
2947857 |
T |
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| Q |
179 |
catacctcttccactactcggttgtaatgcaattaaattatttg |
222 |
Q |
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| T |
2947856 |
catacctcttccaccactcagctgaaatgcaattaaagtatttg |
2947813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 3070764 - 3070905
Alignment:
| Q |
79 |
acatgctcaaaagcactccaattcatctcacg-tccgaatgagctactagtcaaaatcagtattttaatagcaaggagctgcaaatttggcgcttttgat |
177 |
Q |
| |
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||||||||||||| |||||||||| |||||| ||||| || ||||| ||||||| ||| ||||||||||||||| |||||||||||||| | ||| ||| |
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| T |
3070764 |
acatgctcaaaagtactccaattcctctcacactccga-tgcgctacaagtcaaactcaatattttaatagcaagtagctgcaaatttggtgttttcgat |
3070862 |
T |
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| Q |
178 |
ccatacctcttccactactcggttgtaatgcaattaaattatt |
220 |
Q |
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|| ||||||||||| | || | || ||||||||||||||||| |
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| T |
3070863 |
ccccacctcttccaccattcagctgaaatgcaattaaattatt |
3070905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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