View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1308_high_76 (Length: 251)
Name: NF1308_high_76
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_76 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 3807910 - 3808083
Alignment:
| Q |
1 |
aattatcaagcttgaagacggtcttagtcaaacatataatacataagtgcctattaccggttagtgcattccatgtaagttatcaaataccaaaacaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3807910 |
aattatcaagcttgaagacggtcttagtcaaacatataatacataagtgcctattaccggttagtgcattccatgtaagttatcaaataccaaaacaaca |
3808009 |
T |
|
| Q |
101 |
tatagcatgcaacatcatgtctcatcatcatcaaagtagagaggatacatttgttaaacaagataatcaaccacacgaaa |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3808010 |
tatagcatgcaacatcatgtctcatcatcatca------agataatacatttgttaaacaagataatcaaccacacgaaa |
3808083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 3808207 - 3808269
Alignment:
| Q |
177 |
gaaagagagatcaattaaagtggcaacataaacatttactttaaaccaaaaattctaaagtat |
239 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
3808207 |
gaaagagagatcaatttaagtagcaacataaacatttactttaaaccaaaaactccaaagtat |
3808269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 209710 - 209807
Alignment:
| Q |
28 |
tcaaacatataatacataagtgcctattaccggttagtgcattccatgtaagttatcaaataccaaaacaacatatagcatgcaacatcatgtctcat |
125 |
Q |
| |
|
||||||| | |||||| |||||| |||||| || ||||| | |||| || ||||||||||||||||| |||| ||||||||||| ||||| ||||| |
|
|
| T |
209710 |
tcaaacacagaatacacaagtgcatattactaatttgtgcaatgcatggaaattatcaaataccaaaaccacatgtagcatgcaacgtcatgactcat |
209807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 206293 - 206380
Alignment:
| Q |
38 |
aatacataagtgcctattaccggttagtgcattccatgtaagttatcaaataccaaaacaacatatagcatgcaacatcatgtctcat |
125 |
Q |
| |
|
|||||| |||||| |||||| || ||||| | |||| || ||||||||||||||||| |||| ||||||||||| ||||| ||||| |
|
|
| T |
206293 |
aatacacaagtgcatattactaatttgtgcaatgcatggaaattatcaaataccaaaaccacatgtagcatgcaacgtcatgactcat |
206380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 6902057 - 6901960
Alignment:
| Q |
28 |
tcaaacatataatacataagtgcctattaccggttagtgcattccatgtaagttatcaaataccaaaacaacatatagcatgcaacatcatgtctcat |
125 |
Q |
| |
|
||||||| | |||||| |||||| |||||| || ||||| | |||| || |||||||||||||||| |||| ||||||||||| ||||| ||||| |
|
|
| T |
6902057 |
tcaaacacagaatacacaagtgcatattactaatttgtgcaatgcatggaaattatcaaataccaaaatcacatgtagcatgcaacgtcatgactcat |
6901960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University