View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_high_78 (Length: 251)
Name: NF1308_high_78
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_78 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 3707848 - 3707730
Alignment:
| Q |
122 |
tttcacctttatgcatgtgttttccgctaagttggagttgaacctttgactaatcttcttagttctttatataaaagcaacatgtaagtattcacttgag |
221 |
Q |
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| T |
3707848 |
tttcacctttatgcatgtgttttccgctaagttggagttgaaactttgactaatcttcttagttc-ttatataaaagcaacatgtaagtattcacttgag |
3707750 |
T |
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| Q |
222 |
tttcgtgatggtagcctttg |
241 |
Q |
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|||||||||||||||||||| |
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| T |
3707749 |
tttcgtgatggtagcctttg |
3707730 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3707927 - 3707865
Alignment:
| Q |
1 |
aatgttgtgcatcaagtgaatgttaagtaatatattaagtgagatgactcataatgtgctttg |
63 |
Q |
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| T |
3707927 |
aatgttgtgcatcaagtgaatgttaagtaatatattaagtgagatgactcataatgtgctttg |
3707865 |
T |
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