View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1308_high_81 (Length: 244)

Name: NF1308_high_81
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1308_high_81
NF1308_high_81
[»] chr6 (12 HSPs)
chr6 (31-225)||(31561928-31562122)
chr6 (69-225)||(33263411-33263567)
chr6 (83-225)||(33401394-33401536)
chr6 (86-225)||(33058337-33058476)
chr6 (87-225)||(33286319-33286457)
chr6 (90-225)||(33305257-33305392)
chr6 (87-184)||(33388856-33388953)
chr6 (87-225)||(9167540-9167678)
chr6 (87-225)||(33359489-33359627)
chr6 (100-225)||(33272573-33272698)
chr6 (73-225)||(33643766-33643918)
chr6 (85-225)||(33410713-33410853)
[»] chr2 (1 HSPs)
chr2 (85-185)||(17439996-17440096)
[»] scaffold1408 (1 HSPs)
scaffold1408 (95-225)||(1402-1532)
[»] scaffold0428 (1 HSPs)
scaffold0428 (95-225)||(7148-7278)
[»] chr4 (9 HSPs)
chr4 (70-198)||(31503284-31503412)
chr4 (99-185)||(31527232-31527318)
chr4 (102-185)||(31478166-31478249)
chr4 (85-156)||(31498065-31498136)
chr4 (101-184)||(31149174-31149257)
chr4 (83-225)||(31490957-31491099)
chr4 (99-160)||(31033078-31033139)
chr4 (101-181)||(31158051-31158131)
chr4 (124-181)||(31484023-31484080)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 31 - 225
Target Start/End: Original strand, 31561928 - 31562122
Alignment:
Q  31 catcatcatcagctttggaaattatggtggaaatgtcgtctcagaaagcccgaattgtctttcgaacaaattaagatatgttgagtgggttgaatatcct 130  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31561928 catcatcatcagctatggaaattatggtggaaatgtcgtctcagaaagcccgaattgtctttcgaacaaattaagatatgttgagtggcttgaatatcct 31562027  T
Q  131 ttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttggcgagaagcagcattacgcaactatggacaaacaagaaggt 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31562028 ttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttggcgagaagcagcattacgcaactatggacaaacaagaaggt 31562122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 69 - 225
Target Start/End: Complemental strand, 33263567 - 33263411
Alignment:
Q  69 tctcagaaagcccgaattgtctttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaact 168  Q
    |||||| |||||| | ||||||||| |||||||| |||||||||||||||| |||||||||||  ||||||||||||||||||||||||||| |||||||    
T  33263567 tctcaggaagcccaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaact 33263468  T
Q  169 tgtagaattgatcttggcgagaagcagcattacgcaactatggacaaacaagaaggt 225  Q
    ||||||||||||||||| || ||||| |||||| |||||||||| ||||||||||||    
T  33263467 tgtagaattgatcttggtgaaaagcaacattacacaactatggaaaaacaagaaggt 33263411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 83 - 225
Target Start/End: Complemental strand, 33401536 - 33401394
Alignment:
Q  83 aattgtctttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatct 182  Q
    |||| |||||| ||| |||||||||||||||| |||  ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  33401536 aattttctttcaaacgaattaagatatgttgattggcatgaatatcctttcaagtatttgccaacaagttttcaccccaatgaacttgtagaattgatct 33401437  T
Q  183 tggcgagaagcagcattacgcaactatggacaaacaagaaggt 225  Q
    ||  | | |||| |||||  |||||||||| ||||||||||||    
T  33401436 tgtggtgtagcaacattaaacaactatggaaaaacaagaaggt 33401394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 33058476 - 33058337
Alignment:
Q  86 tgtctttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttgg 185  Q
    |||||||||||||||||||||| |||| | ||| ||  |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||     
T  33058476 tgtctttcgaacaaattaagatttgttcactggtttagatatccttccaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttga 33058377  T
Q  186 cgagaagcagcattacgcaactatggacaaacaagaaggt 225  Q
    ||   |||| |||||  |||||||||| ||||||||||||    
T  33058376 cggagagcaacattaaacaactatggaaaaacaagaaggt 33058337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 33286457 - 33286319
Alignment:
Q  87 gtctttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttggc 186  Q
    ||||||| |||||||||||||||||| |||||  || |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||      
T  33286457 gtctttcaaacaaattaagatatgttcagtggactggatatcctttcaaatatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgca 33286358  T
Q  187 gagaagcagcattacgcaactatggacaaacaagaaggt 225  Q
     || |||| |||||  |||||||||| ||| ||||||||    
T  33286357 tagtagcaacattaaacaactatggagaaagaagaaggt 33286319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 225
Target Start/End: Complemental strand, 33305392 - 33305257
Alignment:
Q  90 tttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttggcgag 189  Q
    |||| |||||||||| ||||||||| |||  |||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||   |||    
T  33305392 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagag 33305293  T
Q  190 aagcagcattacgcaactatggacaaacaagaaggt 225  Q
     ||||  |||   |||||||||||||||||||||||    
T  33305292 cagcaaaattgaacaactatggacaaacaagaaggt 33305257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 33388953 - 33388856
Alignment:
Q  87 gtctttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttg 184  Q
    ||||||| |||| |||||||||||||||||||  | | ||||||||||||||||||||||||||||||||||||  ||| |||||||| |||||||||    
T  33388953 gtctttcaaacacattaagatatgttgagtggaattattatcctttcaagtatttgccatcaagttttcaccccagtgatcttgtagagttgatcttg 33388856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 9167678 - 9167540
Alignment:
Q  87 gtctttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttggc 186  Q
    ||||||||||| ||||||||||| ||||||||  |  |||||||||||||||||||||||| ||||||||| || ||||||||||| || ||||||||      
T  9167678 gtctttcgaacgaattaagatatcttgagtggtatcgatatcctttcaagtatttgccatcgagttttcacgccaatgaacttgtacaactgatcttgaa 9167579  T
Q  187 gagaagcagcattacgcaactatggacaaacaagaaggt 225  Q
      | |||| |||||  |||||||||| |||||| |||||    
T  9167578 ctggagcaacattaaacaactatggaaaaacaaaaaggt 9167540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 33359627 - 33359489
Alignment:
Q  87 gtctttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttggc 186  Q
    ||||||| |||  |||||||| | || ||||||  | |||||||| | ||||||||||| |||||||| || || |||||||||||||||||||||||      
T  33359627 gtctttcaaacgcattaagatttattcagtgggaggcatatccttgccagtatttgccaacaagttttaactccaatgaacttgtagaattgatcttgaa 33359528  T
Q  187 gagaagcagcattacgcaactatggacaaacaagaaggt 225  Q
    || |||||||||||  |||||||||| ||||||||||||    
T  33359527 gaaaagcagcattaaacaactatggaaaaacaagaaggt 33359489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 33272698 - 33272573
Alignment:
Q  100 attaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttggcgagaagcagcatt 199  Q
    |||||||||||||||||||| || |||||||||||||| | | ||| |||||||||||||| |||| ||| ||||||||||||||  ||  |||  |||     
T  33272698 attaagatatgttgagtgggatggatatcctttcaagtgtctaccaacaagttttcaccccaatgaccttatagaattgatcttgatgaatagcgacatc 33272599  T
Q  200 acgcaactatggacaaacaagaaggt 225  Q
    |  |||||||||| ||||||||||||    
T  33272598 aaacaactatggaaaaacaagaaggt 33272573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 225
Target Start/End: Original strand, 33643766 - 33643918
Alignment:
Q  73 agaaagcccgaattgtctttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgta 172  Q
    ||||||||| | ||||||||| ||  |||||||||||||||| |||  |   |||||||||| || ||||||||||| |||||| ||| || ||||||||    
T  33643766 agaaagcccaagttgtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgta 33643865  T
Q  173 gaattgatcttggcgagaagcagcattacgcaactatggacaaacaagaaggt 225  Q
    |||||| |||||  ||  |||| |||||  |||||||||| ||||||||||||    
T  33643866 gaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaaggt 33643918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 33410853 - 33410713
Alignment:
Q  85 ttgtctttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttg 184  Q
    ||||||||| ||||||||||| ||| |||| ||||   | |||||||||  | | ||||||| ||||||||||||  |||||||||| ||||||||||||    
T  33410853 ttgtctttcaaacaaattaaggtattttgactgggagcattatcctttctgggaattgccattaagttttcaccctaatgaacttgttgaattgatcttg 33410754  T
Q  185 gcgagaagcagcattacgcaactatggacaaacaagaaggt 225  Q
      ||  |||||| | |  |||||||||| || |||||||||    
T  33410753 aagaatagcagcttcaaacaactatggaaaagcaagaaggt 33410713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 17439996 - 17440096
Alignment:
Q  85 ttgtctttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttg 184  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |||    
T  17439996 ttgtctttcgaacaaattaagatatgttgagtggcctaaatatcctttcaagtatttgccaacaagttttcaccccaatgaactagtagaattgattttg 17440095  T
Q  185 g 185  Q
    |    
T  17440096 g 17440096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 1532 - 1402
Alignment:
Q  95 aacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttggcgagaagca 194  Q
    ||||||||| |||||||| | |||  || |||||||||||||||| |||||||||||||||||||   |||||||||||||||||| |||| |||||||     
T  1532 aacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagct 1433  T
Q  195 gcattacgcaactatggacaaacaagaaggt 225  Q
    ||||||  |||||||||| ||||||||||||    
T  1432 gcattaaacaactatggaaaaacaagaaggt 1402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 7278 - 7148
Alignment:
Q  95 aacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttggcgagaagca 194  Q
    ||||||||| |||||||| | |||  || |||||||||||||||| |||||||||||||||||||   |||||||||||||||||| |||| |||||||     
T  7278 aacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagct 7179  T
Q  195 gcattacgcaactatggacaaacaagaaggt 225  Q
    ||||||  |||||||||| ||||||||||||    
T  7178 gcattaaacaactatggaaaaacaagaaggt 7148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 70 - 198
Target Start/End: Original strand, 31503284 - 31503412
Alignment:
Q  70 ctcagaaagcccgaattgtctttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaactt 169  Q
    ||||| |||||  ||||||||||| ||| |||||||||||||||| |||  |||||||||||||||||||||||| ||||||||||| ||  || |||||    
T  31503284 ctcaggaagcctcaattgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccgtcaagttttcagccaaatcaactt 31503383  T
Q  170 gtagaattgatcttggcgagaagcagcat 198  Q
    || || |||||||||  ||| ||||||||    
T  31503384 gttgagttgatcttgaagagtagcagcat 31503412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 31527318 - 31527232
Alignment:
Q  99 aattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttgg 185  Q
    ||||||||||||||||||||   ||||||||||||| ||||||||||||||||||||| |||||  ||||||| || ||||||||||    
T  31527318 aattaagatatgttgagtggcgggaatatcctttcatgtatttgccatcaagttttcaaccctaccaacttgttgagttgatcttgg 31527232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 31478166 - 31478249
Alignment:
Q  102 taagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttgg 185  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| |||||| || |  || ||||||| |||||||||||||    
T  31478166 taagatatgttgagtggagtgaatatcctttcaagtatttgccatcgagttttgactctaatcaacttgttgaattgatcttgg 31478249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 31498065 - 31498136
Alignment:
Q  85 ttgtctttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttca 156  Q
    ||||||||| ||||||||||||||| ||||||||  |||||||||||||| |||||| ||||||| ||||||    
T  31498065 ttgtctttccaacaaattaagatattttgagtggcatgaatatcctttcatgtatttaccatcaaattttca 31498136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 31149257 - 31149174
Alignment:
Q  101 ttaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttg 184  Q
    ||||||||||| ||||||  |  ||||||||||||||||||||||||||||||||  ||  || ||||||| ||||||||||||    
T  31149257 ttaagatatgtcgagtggaatagatatcctttcaagtatttgccatcaagttttctgcctaatcaacttgtcgaattgatcttg 31149174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 31490957 - 31491099
Alignment:
Q  83 aattgtctttcgaacaaattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatct 182  Q
    |||| |||||| || |||||||||||| |||| |||| |||||||||||||  |||||| |||||||||| ||| |   ||||||||   ||||||||||    
T  31490957 aattatctttctaataaattaagatatcttgaatgggatgaatatcctttcttgtatttaccatcaagttctcagcttgatgaactttccgaattgatct 31491056  T
Q  183 tggcgagaagcagcattacgcaactatggacaaacaagaaggt 225  Q
    | |   | |||||||| || |||||||||| | ||||||||||    
T  31491057 tagtaggtagcagcatcacacaactatggaaagacaagaaggt 31491099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 31033139 - 31033078
Alignment:
Q  99 aattaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccc 160  Q
    |||| |||||||||||||||  |||||||||||||| |||||||||  ||||||||||||||    
T  31033139 aattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcacccc 31033078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 31158131 - 31158051
Alignment:
Q  101 ttaagatatgttgagtgggttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatc 181  Q
    |||||||| || ||||||| |  |||||||||||||||||||||| || ||||||| ||| || ||||||| |||||||||    
T  31158131 ttaagatacgtagagtggggtagatatcctttcaagtatttgccagcatgttttcagcccaatcaacttgttgaattgatc 31158051  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 31484023 - 31484080
Alignment:
Q  124 atatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatc 181  Q
    ||||||||||| |||||||||||||| |||||  ||| || ||||||| |||||||||    
T  31484023 atatcctttcatgtatttgccatcaaattttcggcccaatcaacttgttgaattgatc 31484080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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