View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1308_high_82 (Length: 235)
Name: NF1308_high_82
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_high_82 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 5783435 - 5783284
Alignment:
| Q |
1 |
catattatggagaagaattggtcgatcggtcaagaaccaacccaccaaacacaatttgggatcatgttacgattcatcaacctcctcctcaatatcgaaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5783435 |
catattatggagatgaattggtcgatcggtcaagaacctacccaccaaacacaatttgggatcatgttacgattcatcaacctcctcctcaatatcgaaa |
5783336 |
T |
|
| Q |
101 |
ctgagacctcataattactcagatttaaatcctccaaatttatttatgtcat |
152 |
Q |
| |
|
|||||||||||| || ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
5783335 |
ctgagacctcatcatcacttaaatttaaatcctccaaatttatttatgtcat |
5783284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University