View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1308_low_12 (Length: 534)

Name: NF1308_low_12
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1308_low_12
NF1308_low_12
[»] chr5 (18 HSPs)
chr5 (8-505)||(40283118-40283615)
chr5 (14-215)||(40332963-40333164)
chr5 (14-254)||(40386241-40386481)
chr5 (8-215)||(40375990-40376197)
chr5 (345-505)||(40311103-40311263)
chr5 (345-505)||(40326383-40326543)
chr5 (338-440)||(40303490-40303592)
chr5 (51-189)||(40598559-40598697)
chr5 (346-457)||(40409057-40409168)
chr5 (354-496)||(40362323-40362465)
chr5 (51-163)||(40276849-40276961)
chr5 (337-445)||(40333946-40334054)
chr5 (345-442)||(40256990-40257087)
chr5 (346-447)||(40406348-40406449)
chr5 (282-331)||(40597781-40597830)
chr5 (337-445)||(40387224-40387332)
chr5 (336-444)||(40597647-40597755)
chr5 (354-447)||(40457394-40457487)


Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 8 - 505
Target Start/End: Original strand, 40283118 - 40283615
Alignment:
Q  8 tagcataggctatacgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaa 107  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283118 tagcaaaggctatatgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaa 40283217  T
Q  108 aaggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283218 aaggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatg 40283317  T
Q  208 aatttaatgaattatatgaaaaaataaaggcactaaatgggaaatgtgaagggttacctgaaaaaattataaaggtgggatcttccttcggaagtaaacc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283318 aatttaatgaattatatgaaaaaataaaggcactaaatgggaaatgtgaagggttacctgaaaaaattataaaggtgggatcttccttcggaagtaaacc 40283417  T
Q  308 aattgaggaatggaaagtatcacttggtaaatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgct 407  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283418 aattgaggaatggaaagcatcacttgctaaatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgct 40283517  T
Q  408 ttgtgccgggaggggttcaagaccttcatggatgatgaggaactgaagggcggggaggaaatttcatcatctctagtcaaagcaattgaggcatcaag 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283518 ttgtgccgggaggggttcaagaccttcatggatgatgaggaactgaaaggcggggaggaaatttcatcatctctagtcaaagcaattgaggcatcaag 40283615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 40332963 - 40333164
Alignment:
Q  14 aggctatacgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaaggtt 113  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  40332963 aggctacatgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgtgcgtgcaaaagttgaagcaattgatcgtaaaactgaaaaggtt 40333062  T
Q  114 agagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatgaattta 213  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||| ||||||||||||||| | ||||||||||||| |||||||||| ||||||||    
T  40333063 agagatgttgtgtttgagtggctaaaagaagcagacataatcatgcaaaaaatggagaatcttaaattacaatcaaaaccaccatcatggattgaattta 40333162  T
Q  214 at 215  Q
    ||    
T  40333163 at 40333164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 40386241 - 40386481
Alignment:
Q  14 aggctatacgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaaggtt 113  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  |||||||||||||||||    
T  40386241 aggctatatgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgtgcgtgcacaagttgaagcaattgacagtaaaactgaaaaggtt 40386340  T
Q  114 agagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatgaattta 213  Q
    |||||||||||||||||||||||||||||| |||| ||  |||| ||| ||||||||||||||| | ||||||||||||| |||||||||| ||||||||    
T  40386341 agagatgttgtgtttgagtggctaaaagaagcagaaatagtcatgcaaaaaatggagaatcttaaattacaatcaaaaccaccatcatggattgaattta 40386440  T
Q  214 atgaattatatgaaaaaataaaggcactaaatgggaaatgt 254  Q
    || ||||  | |||||||| |  |||||||||  |||||||    
T  40386441 ataaattgcaggaaaaaattacagcactaaataagaaatgt 40386481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 40375990 - 40376197
Alignment:
Q  8 tagcataggctatacgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaa 107  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||  ||||||||| ||||||| || ||||||||||||||||||||||  ||||||||||    
T  40375990 tagcaaaggctatatgaaagttgaaagacaaaagaacaaactctattcaaatcgcgatcgtgtgcatgcaaaagttgaagcaattgatcctaaaactgaa 40376089  T
Q  108 aaggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatg 207  Q
    ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||| || ||||||||||||| |||||||||| ||    
T  40376090 aaggtcagagatgttgtgtttgagtggctaaaaaaaacagacataatcatacaagaagtggagaatcttgcagtacaatcaaaaccaccatcatggattg 40376189  T
Q  208 aatttaat 215  Q
    ||||||||    
T  40376190 aatttaat 40376197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 345 - 505
Target Start/End: Original strand, 40311103 - 40311263
Alignment:
Q  345 attttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatg 444  Q
    |||||| |||||||||||||  ||||||||||| | |||||||| |||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  40311103 attttcatcagttttagaggaaaagatactcgtgactcttttacgggttttctctatgatgctctatgccgggaagggttcaagaccttcatggatgatg 40311202  T
Q  445 aggaactgaagggcggggaggaaatttcatcatctctagtcaaagcaattgaggcatcaag 505  Q
    |||   ||||||| || || ||||||||||| |||||| ||||||||||||||||||||||    
T  40311203 aggggttgaagggtggagacgaaatttcatcttctctaatcaaagcaattgaggcatcaag 40311263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 345 - 505
Target Start/End: Original strand, 40326383 - 40326543
Alignment:
Q  345 attttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatg 444  Q
    ||||| || ||||||| ||| |||||||||||  | ||||| ||||||||||||||| ||  | |||| || ||||||||||||||||||||||||||||    
T  40326383 atttttctaagttttaaaggagaagatactcgctactctttcacaggttttctctataatattctgtgtcgagaggggttcaagaccttcatggatgatg 40326482  T
Q  445 aggaactgaagggcggggaggaaatttcatcatctctagtcaaagcaattgaggcatcaag 505  Q
    ||||| ||||||| ||| | |||||||||||||||||| ||||||||||||||||||||||    
T  40326483 aggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaag 40326543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 440
Target Start/End: Original strand, 40303490 - 40303592
Alignment:
Q  338 atggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatg 437  Q
    ||||||||||||| ||||||||||||| |||||||||||  | |||||||| |||||||||||||||||| | || || || || ||||| || ||||||    
T  40303490 atggcagattttcatcagttttagaggagaagatactcggtactcttttacgggttttctctatgatgctctctgtcgagaaggattcaaaacattcatg 40303589  T
Q  438 gat 440  Q
    |||    
T  40303590 gat 40303592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 189
Target Start/End: Complemental strand, 40598697 - 40598559
Alignment:
Q  51 atttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaaacagaca 150  Q
    ||||||||||| |||| || ||| | |||||||||||||| ||||   |||||||||||||| |  |||| ||||||||||||||||||||||||||| |    
T  40598697 atttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacagata 40598598  T
Q  151 tgatcatacaagaaatggagaatcttacaatacaatcaa 189  Q
    |  |||| |||||  | || ||||| ||| |||||||||    
T  40598597 tactcatgcaagaggttgaaaatctgacactacaatcaa 40598559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 457
Target Start/End: Original strand, 40409057 - 40409168
Alignment:
Q  346 ttttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatga 445  Q
    |||| ||||||||| | ||||||||||||||  | ||||||||||| ||||||||| ||| |||| | |  ||||| ||||| | |||||||||||||||    
T  40409057 tttttctcagtttttgcggggaagatactcgctactcttttacaggatttctctatcatgatttgcgtcatgagggattcaaaatcttcatggatgatga 40409156  T
Q  446 ggaactgaaggg 457  Q
    || | |||||||    
T  40409157 gggattgaaggg 40409168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 496
Target Start/End: Original strand, 40362323 - 40362465
Alignment:
Q  354 agttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatgaggaactga 453  Q
    |||||| | ||||||||||||||  | || ||||| || || |||||| |||||||||| || ||||| ||||||| ||||||||||||||||| | ||     
T  40362323 agtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatgagggattgg 40362422  T
Q  454 agggcggggaggaaatttcatcatctctagtcaaagcaattga 496  Q
    |||| ||  |  ||||||||  | ||||| |||||||||||||    
T  40362423 agggtggaaaccaaatttcacaaactctactcaaagcaattga 40362465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 40276849 - 40276961
Alignment:
Q  51 atttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaaacagaca 150  Q
    ||||||||||||||||||| | ||||||||  | |||||||||||  || || ||| ||||| || |||| |||| |  |||||||||||||| ||||||    
T  40276849 atttcaaatcgtgatcgtgtgagtgcaaaatataaagcaattgatcatagaattgataaggtgagcgatgatgtgatcaagtggctaaaagaagcagaca 40276948  T
Q  151 tgatcatacaaga 163  Q
    |  ||||||||||    
T  40276949 tactcatacaaga 40276961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 445
Target Start/End: Original strand, 40333946 - 40334054
Alignment:
Q  337 aatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcat 436  Q
    |||||||||| || ||||||||||||||||||||||||||  | ||||||||||||  ||| | | | ||||| | ||  | ||| |||||||| |||||    
T  40333946 aatggcagatgtttctcagttttagaggggaagatactcgctactcttttacaggtagtctttttcaagctttatcccaagggggattcaagactttcat 40334045  T
Q  437 ggatgatga 445  Q
    |||||||||    
T  40334046 ggatgatga 40334054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 442
Target Start/End: Complemental strand, 40257087 - 40256990
Alignment:
Q  345 attttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatga 442  Q
    ||||| ||||| ||| |||| |||||||||||| | ||||||||||| | |||||||  ||||||||||| ||  || || || ||||||||||||||    
T  40257087 atttttctcagctttcgaggagaagatactcgttattcttttacaggctctctctatcgtgctttgtgccaggtcggatttaaaaccttcatggatga 40256990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 447
Target Start/End: Original strand, 40406348 - 40406449
Alignment:
Q  346 ttttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatga 445  Q
    |||| ||||||||| | ||||||||||||||  | || |||||||| ||||||||  |||||||| |    ||||| ||||||| |||||||||||||||    
T  40406348 tttttctcagtttttgcggggaagatactcgctactcctttacaggatttctctaccatgctttgagtaatgagggattcaagatcttcatggatgatga 40406447  T
Q  446 gg 447  Q
    ||    
T  40406448 gg 40406449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 40597830 - 40597781
Alignment:
Q  282 gtgggatcttccttcggaagtaaaccaattgaggaatggaaagtatcact 331  Q
    ||||||||||||||  || |||||||||||||||||||||||| ||||||    
T  40597830 gtgggatcttccttaagaggtaaaccaattgaggaatggaaagcatcact 40597781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 445
Target Start/End: Original strand, 40387224 - 40387332
Alignment:
Q  337 aatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcat 436  Q
    ||||| |||| || ||||||||||||||||||||||||||  | ||||||||||||  ||| | | | ||||| | ||  | ||| |||||||| |||||    
T  40387224 aatgggagatgtttctcagttttagaggggaagatactcgctactcttttacaggtagtctttttcaagctttatcccaagggggattcaagactttcat 40387323  T
Q  437 ggatgatga 445  Q
    |||||||||    
T  40387324 ggatgatga 40387332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 444
Target Start/End: Complemental strand, 40597755 - 40597647
Alignment:
Q  336 aaatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttca 435  Q
    |||||||| |||||| | ||||||||||| |||||||| ||  | ||||||||||||  ||| ||| | ||||| || |  | ||| |||||||||||||    
T  40597755 aaatggcaaattttcttaagttttagaggagaagatacacgctactcttttacaggtaatctgtataaagctttatgtcaagggggattcaagaccttca 40597656  T
Q  436 tggatgatg 444  Q
    |||||||||    
T  40597655 tggatgatg 40597647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 447
Target Start/End: Complemental strand, 40457487 - 40457394
Alignment:
Q  354 agttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatgagg 447  Q
    |||||| | ||||||||||||||  | || ||||| || || |||||| |||||||| | |  ||||| ||||||| |||||||||||||||||    
T  40457487 agtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgcgtctagagggattcaagatcttcatggatgatgagg 40457394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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