View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_13 (Length: 528)
Name: NF1308_low_13
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 54 - 521
Target Start/End: Original strand, 3659641 - 3660120
Alignment:
| Q |
54 |
cactatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttcctcgtcatcttcaacaccctgataagagtccacaacatct |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3659641 |
cactatatctccgtcatcgctactacgtgttgatcctccactgtcccccaccagcacttcctcgtcatcttcaacaccctgagaagagtccacaacatct |
3659740 |
T |
|
| Q |
154 |
acaactgcaaactttctattctccaaaacctcgccttggtcatcatttgaggaacttccatctgattcacaagttcttgtgctataaacctcacaaacat |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3659741 |
acaactgcaaactttctattctccaaaacctcgccttggtcatcatttgaggaacttccatccgattcacaagttcttgtgctataaacctcacaaacat |
3659840 |
T |
|
| Q |
254 |
taccattctctgcaaatctcacactcttcttcactctaggttgaattacttgcctttgaacaaagacaccatttttgttcccatcccttctagcgaccac |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659841 |
taccattctctgcaaatctcacactcttcttcactctaggttgaattacttgcctttgaacaaagacaccatttttgttcccatcccttctagcgaccac |
3659940 |
T |
|
| Q |
354 |
aacatcagttactccatcgtcatcata------------atcatgaacgctctcctcattctctaaaccttcctcatcatctccataaaccttacacaat |
441 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659941 |
aacatcagttactccatcgtcatcataatcatcatcatcatcatgaacgctctcctcattctctaaaccttcctcatcatctccataaaccttacacaat |
3660040 |
T |
|
| Q |
442 |
ttgctaatcttctcaactctccccctcaaattcttcaacagcttcttcttctcatcatcatcaccttctgatattcttgg |
521 |
Q |
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| T |
3660041 |
ttgctaatcttctcaactctccccctcaaattcttcaacagcttcttcttctcatcatcatcaccttctggttttcttgg |
3660120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 3653366 - 3653449
Alignment:
| Q |
30 |
ttggtgtgcttgaaactgctctttcactatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttc |
113 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3653366 |
ttggtgtgcttgaaactactctttcactatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagaacttc |
3653449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 3657379 - 3657452
Alignment:
| Q |
40 |
tgaaactgctctttcactatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttc |
113 |
Q |
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|||||||||||||||| | |||||| | | | || ||||| ||||||||| ||| |||||||||||||||||| |
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| T |
3657379 |
tgaaactgctctttcagtcaatctccataaccactgctacgcgttgatccttcaccgtcctccaccagcacttc |
3657452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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